RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SLC5A4Q9NY91 659 aa22.94■■□□□ 1.26
COL9A3-206ENST00000466532 ROBO3Q96MS0 1386 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 GPAA1O43292 621 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 COBLO75128 1261 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 BMP8BP34820 402 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 LRRC26Q2I0M4 334 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 ABRAQ8N0Z2 381 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.93■■□□□ 1.26
COL9A3-206ENST00000466532 MKNK2Q9HBH9 465 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 FBXO28Q9NVF7 368 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 DNAH12Q6ZR08 3092 aa22.93■■□□□ 1.26
COL9A3-206ENST00000466532 M0R2C6 588 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 SLC25A27O95847 323 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 RASA1P20936 1047 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 FAM83BQ5T0W9 1011 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 ADAMTS5Q9UNA0 930 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 PCDHB15Q9Y5E8 787 aa22.92■■□□□ 1.26
COL9A3-206ENST00000466532 TTC41PQ6P2S7 1318 aa22.91■■□□□ 1.26
COL9A3-206ENST00000466532 FCER1AP12319 257 aa22.91■■□□□ 1.26
COL9A3-206ENST00000466532 GNAT2P19087 354 aa22.91■■□□□ 1.26
COL9A3-206ENST00000466532 MAGEA10P43363 369 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-206ENST00000466532 TDO2P48775 406 aa22.91■■□□□ 1.26
COL9A3-206ENST00000466532 SENP6Q9GZR1 1112 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-206ENST00000466532 EPB41L4AQ9HCS5 686 aaPredicted RBP22.91■■□□□ 1.26
COL9A3-206ENST00000466532 PPP1R9AQ9ULJ8 1098 aa22.91■■□□□ 1.26
COL9A3-206ENST00000466532 SOX1O00570 391 aaPredicted RBP22.9■■□□□ 1.26
COL9A3-206ENST00000466532 APPP05067 770 aa22.9■■□□□ 1.26
COL9A3-206ENST00000466532 LRRFIP1Q32MZ4 808 aaKnown RBP22.9■■□□□ 1.26
COL9A3-206ENST00000466532 DNM1LO00429 736 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 VWA5AO00534 786 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 ERC2O15083 957 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 ANO1Q5XXA6 986 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 RIOX2Q8IUF8 465 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 LRCH3Q96II8 777 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 MAML3Q96JK9 1138 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 MMP19Q99542 508 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 NYAP2Q9P242 653 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 LTBP2Q14767 1821 aa22.89■■□□□ 1.25
COL9A3-206ENST00000466532 SEPT4O43236 478 aa22.88■■□□□ 1.25
COL9A3-206ENST00000466532 STAT3P40763 770 aa22.88■■□□□ 1.25
COL9A3-206ENST00000466532 PI4K2BQ8TCG2 481 aa22.88■■□□□ 1.25
COL9A3-206ENST00000466532 OTUD7AQ8TE49 926 aaPredicted RBP22.88■■□□□ 1.25
COL9A3-206ENST00000466532 NUP88Q99567 741 aaPredicted RBP22.88■■□□□ 1.25
COL9A3-206ENST00000466532 ZNF214Q9UL59 606 aaPredicted RBP22.88■■□□□ 1.25
COL9A3-206ENST00000466532 PATL2C9JE40 543 aaKnown RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 F5H6K3 240 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 ATN1P54259 1190 aaPredicted RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 KLRC3Q07444 240 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 PRAMEF19Q5SWL8 479 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 GJC2Q5T442 439 aaPredicted RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 IFNL3Q8IZI9 196 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 ZNF444Q8N0Y2 327 aaPredicted RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 ARRDC4Q8NCT1 418 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 REPS2Q8NFH8 660 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 SEC62Q99442 399 aaKnown RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 FSD1Q9BTV5 496 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 UBE2OQ9C0C9 1292 aaKnown RBP22.87■■□□□ 1.25
COL9A3-206ENST00000466532 ZNF287Q9HBT7 754 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 MCM3APO60318 1980 aa22.87■■□□□ 1.25
COL9A3-206ENST00000466532 PRDM1O75626 825 aa22.86■■□□□ 1.25
COL9A3-206ENST00000466532 PGK2P07205 417 aa22.86■■□□□ 1.25
COL9A3-206ENST00000466532 KCTD2Q14681 263 aa22.86■■□□□ 1.25
COL9A3-206ENST00000466532 SLF1Q9BQI6 1058 aa22.86■■□□□ 1.25
COL9A3-206ENST00000466532 CLIP2Q9UDT6 1046 aa22.86■■□□□ 1.25
COL9A3-206ENST00000466532 LAMA3Q16787 3333 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 IGKV6D-41A0A0C4DH26 115 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 KBTBD13C9JR72 458 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 NDUFB10O96000 172 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 MX1P20591 662 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 COPB2P35606 906 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 RRP1P56182 461 aaKnown RBP22.85■■□□□ 1.25
COL9A3-206ENST00000466532 TDHQ8IZJ6 230 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 NACAP1Q9BZK3 213 aa22.85■■□□□ 1.25
COL9A3-206ENST00000466532 MYCNP04198 464 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-206ENST00000466532 MDM2Q00987 491 aaPredicted RBP22.84■■□□□ 1.25
COL9A3-206ENST00000466532 ZNF792Q3KQV3 632 aa22.83■■□□□ 1.25
COL9A3-206ENST00000466532 ZMYM1Q5SVZ6 1142 aa22.83■■□□□ 1.25
COL9A3-206ENST00000466532 SNRNP48Q6IEG0 339 aaKnown RBP22.83■■□□□ 1.25
COL9A3-206ENST00000466532 CEP95Q96GE4 821 aa22.83■■□□□ 1.25
COL9A3-206ENST00000466532 TEX13BQ9BXU2 312 aa22.83■■□□□ 1.25
COL9A3-206ENST00000466532 NAPBQ9H115 298 aa22.83■■□□□ 1.25
COL9A3-206ENST00000466532 RTP1P59025 263 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 PDE4BQ07343 736 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 PRPF38AQ8NAV1 312 aaKnown RBP22.82■■□□□ 1.24
COL9A3-206ENST00000466532 MKL1Q969V6 931 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 TINF2Q9BSI4 451 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 MTMR4Q9NYA4 1195 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 ZBTB47Q9UFB7 747 aaPredicted RBP22.82■■□□□ 1.24
COL9A3-206ENST00000466532 NRBP1Q9UHY1 535 aa22.82■■□□□ 1.24
COL9A3-206ENST00000466532 DIS3Q9Y2L1 958 aaKnown RBP22.82■■□□□ 1.24
COL9A3-206ENST00000466532 PLIN4Q96Q06 1357 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 TTLL1O95922 423 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 SLC3A2P08195 630 aaKnown RBP22.81■■□□□ 1.24
COL9A3-206ENST00000466532 TSPY3P0CV98 308 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 TSPY8P0CW00 308 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 LRIT3Q3SXY7 679 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 FAM47AQ5JRC9 791 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 LRRC47Q8N1G4 583 aaKnown RBP22.81■■□□□ 1.24
COL9A3-206ENST00000466532 ATP11BQ9Y2G3 1177 aa22.81■■□□□ 1.24
COL9A3-206ENST00000466532 SLC4A3P48751 1232 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms