RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TRIM60	Q495X7	471 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	FAM47A	Q5JRC9	791 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	C9orf50	Q5SZB4	431 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	BOLA2	Q9H3K6	86 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	PDLIM7	Q9NR12	457 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	FBXO28	Q9NVF7	368 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	ZNF214	Q9UL59	606 aa	Predicted RBP	13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	PLXNA1	Q9UIW2	1896 aa		13.48	□□□□□ -0.25
PTPN7-204	ENST00000462815	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	TRIM43B	A6NCK2	446 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	USP17L12	C9JPN9	530 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	USP17L21	D6R901	530 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	RAB11FIP3	O75154	756 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	IFIT2	P09913	472 aa	Known RBP	13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	EEF2	P13639	858 aa	Known RBP	13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	ITGB8	P26012	769 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	UBE3C	Q15386	1083 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	SHH	Q15465	462 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	ZNF792	Q3KQV3	632 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	CTR9	Q6PD62	1173 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	SH3RF1	Q7Z6J0	888 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	ARRDC4	Q8NCT1	418 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	TRIM43	Q96BQ3	446 aa	Predicted RBP	13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	CCDC17	Q96LX7	622 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	PUS7L	Q9H0K6	701 aa	Known RBP	13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	ARHGEF10L	Q9HCE6	1279 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	PHF24	Q9UPV7	400 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	ATP11B	Q9Y2G3	1177 aa		13.47	□□□□□ -0.25
PTPN7-204	ENST00000462815	VWA5A	O00534	786 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	TAL1	P17542	331 aa	Predicted RBP	13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	ADCYAP1R1	P41586	468 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	NCAPG2	Q86XI2	1143 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	RIOX2	Q8IUF8	465 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	SH2D4A	Q9H788	454 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	NRBP1	Q9UHY1	535 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	PPP1R9A	Q9ULJ8	1098 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	COG6	Q9Y2V7	657 aa		13.46	□□□□□ -0.25
PTPN7-204	ENST00000462815	CHD7	Q9P2D1	2997 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	KBTBD13	C9JR72	458 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	SLC25A27	O95847	323 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	PGK2	P07205	417 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	FCER1A	P12319	257 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	PLS1	Q14651	629 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	BAD	Q92934	168 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	DDX19B	Q9UMR2	479 aa		13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	DIS3	Q9Y2L1	958 aa	Known RBP	13.45	□□□□□ -0.26
PTPN7-204	ENST00000462815	REV3L	O60673	3130 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	IGKV6D-41	A0A0C4DH26	115 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	ADAMTS4	O75173	837 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	HMMR	O75330	724 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	EPHB4	P54760	987 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	FERMT2	Q96AC1	680 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	LENG1	Q96BZ8	264 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	TINF2	Q9BSI4	451 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	TTYH1	Q9H313	450 aa	Predicted RBP	13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	KANSL2	Q9H9L4	492 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	SLC5A4	Q9NY91	659 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	SMCHD1	A6NHR9	2005 aa		13.44	□□□□□ -0.26
PTPN7-204	ENST00000462815	DNAJC25-GNG10	A0A024R161	153 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	RASA1	P20936	1047 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	TLE2	Q04725	743 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	SBK1	Q52WX2	424 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	FAM83B	Q5T0W9	1011 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	FGD4	Q96M96	766 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	FAM161B	Q96MY7	647 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	STRBP	Q96SI9	672 aa	Known RBP	13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	MMP19	Q99542	508 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.43	□□□□□ -0.26	6e-7	■■■■□ 19.6
PTPN7-204	ENST00000462815	XPNPEP3	Q9NQH7	507 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815	SLC4A4	Q9Y6R1	1079 aa		13.43	□□□□□ -0.26
PTPN7-204	ENST00000462815		A0A1W2PQ45	241 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815		A0A1W2PQY0	241 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	GSG1L2	A8MUP6	293 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	PGK1	P00558	417 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	MS4A1	P11836	297 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	STAT3	P40763	770 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	SMAD3	P84022	425 aa	Known RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	C20orf194	Q5TEA3	1177 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	NUP88	Q99567	741 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	CDX2	Q99626	313 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	SEMA6B	Q9H3T3	888 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	PRDM5	Q9NQX1	630 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	PRKAG2	Q9UGJ0	569 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	RIPK3	Q9Y572	518 aa		13.42	□□□□□ -0.26
PTPN7-204	ENST00000462815	ATP2A1	O14983	1001 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	KIAA0355	O15063	1070 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	ADCY6	O43306	1168 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	SMARCA5	O60264	1052 aa	Predicted RBP	13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	SNAI1	O95863	264 aa	Predicted RBP	13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	RARB	P10826	455 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	ZNF697	Q5TEC3	545 aa		13.41	□□□□□ -0.26
PTPN7-204	ENST00000462815	MAMDC4	Q6UXC1	1216 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms