RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 STAT3P40763 770 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 RTP1P59025 263 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 TMEM132BQ14DG7 1078 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 MAML3Q96JK9 1138 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 NRBP1Q9UHY1 535 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 PPP1R9AQ9ULJ8 1098 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 ATP11BQ9Y2G3 1177 aa18.42■□□□□ 0.54
SKA3-204ENST00000462482 MINDY4BA8MYZ0 360 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 CHGBP05060 677 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 ZFYP08048 801 aaPredicted RBP18.41■□□□□ 0.54
SKA3-204ENST00000462482 GNAT2P19087 354 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 SBK1Q52WX2 424 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 FAM83BQ5T0W9 1011 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 ANO1Q5XXA6 986 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 RIOX2Q8IUF8 465 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 KBTBD3Q8NAB2 608 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 APPBP2Q92624 585 aa18.41■□□□□ 0.54
SKA3-204ENST00000462482 STRBPQ96SI9 672 aaKnown RBP18.41■□□□□ 0.54
SKA3-204ENST00000462482 VWA5AO00534 786 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 IGHA2P01877 340 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 APPP05067 770 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 RARBP10826 455 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 TDO2P48775 406 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 C20orf194Q5TEA3 1177 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 FBXO28Q9NVF7 368 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 ADAMTS5Q9UNA0 930 aa18.4■□□□□ 0.54
SKA3-204ENST00000462482 SMIM22K7EJ46 135 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 RNF113AO15541 343 aaKnown RBP18.39■□□□□ 0.53
SKA3-204ENST00000462482 PRAMEF19Q5SWL8 479 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 SLC39A5Q6ZMH5 540 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 ZNF444Q8N0Y2 327 aaPredicted RBP18.39■□□□□ 0.53
SKA3-204ENST00000462482 STK11IPQ8N1F8 1099 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 SLF1Q9BQI6 1058 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 NACAP1Q9BZK3 213 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 PRDM5Q9NQX1 630 aaPredicted RBP18.39■□□□□ 0.53
SKA3-204ENST00000462482 NYAP2Q9P242 653 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 CNPY2Q9Y2B0 182 aa18.39■□□□□ 0.53
SKA3-204ENST00000462482 DIS3Q9Y2L1 958 aaKnown RBP18.39■□□□□ 0.53
SKA3-204ENST00000462482 GSG1L2A8MUP6 293 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 ZBED4O75132 1171 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 PGK2P07205 417 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 ADCYAP1R1P41586 468 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 RNF180Q86T96 592 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 TINF2Q9BSI4 451 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 TEX13BQ9BXU2 312 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 DCTPP1Q9H773 170 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 XPNPEP3Q9NQH7 507 aa18.38■□□□□ 0.53
SKA3-204ENST00000462482 RANBP2P49792 3224 aaKnown RBP18.38■□□□□ 0.53
SKA3-204ENST00000462482 F5H6K3 240 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 ERC2O15083 957 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 RASA1P20936 1047 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 KLRC3Q07444 240 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 LRRC41Q15345 812 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 PRPF38AQ8NAV1 312 aaKnown RBP18.37■□□□□ 0.53
SKA3-204ENST00000462482 OSBP2Q969R2 916 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 DDX11Q96FC9 970 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 CLIP2Q9UDT6 1046 aa18.37■□□□□ 0.53
SKA3-204ENST00000462482 ZBTB47Q9UFB7 747 aaPredicted RBP18.37■□□□□ 0.53
SKA3-204ENST00000462482 GPAA1O43292 621 aa18.36■□□□□ 0.53
SKA3-204ENST00000462482 SLC3A2P08195 630 aaKnown RBP18.36■□□□□ 0.53
SKA3-204ENST00000462482 SLC4A3P48751 1232 aa18.36■□□□□ 0.53
SKA3-204ENST00000462482 FAM47AQ5JRC9 791 aa18.36■□□□□ 0.53
SKA3-204ENST00000462482 SNRNP48Q6IEG0 339 aaKnown RBP18.36■□□□□ 0.53
SKA3-204ENST00000462482 Q7L0L9 218 aa18.36■□□□□ 0.53
SKA3-204ENST00000462482 FERMT2Q96AC1 680 aa18.36■□□□□ 0.53
SKA3-204ENST00000462482 ZNF214Q9UL59 606 aaPredicted RBP18.36■□□□□ 0.53
SKA3-204ENST00000462482 NDUFB10O96000 172 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 AKR1A1P14550 325 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 ZNF792Q3KQV3 632 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 TRIM60Q495X7 471 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 TSHZ3Q63HK5 1081 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 MSL3Q8N5Y2 521 aaKnown RBP18.35■□□□□ 0.53
SKA3-204ENST00000462482 NUP88Q99567 741 aaPredicted RBP18.35■□□□□ 0.53
SKA3-204ENST00000462482 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.35■□□□□ 0.53
SKA3-204ENST00000462482 MTMR10Q9NXD2 777 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 ISY1Q9ULR0 285 aaKnown RBP18.35■□□□□ 0.53
SKA3-204ENST00000462482 STXBP5LQ9Y2K9 1186 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 ZNF236Q9UL36 1845 aa18.35■□□□□ 0.53
SKA3-204ENST00000462482 ROBO3Q96MS0 1386 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 TTC41PQ6P2S7 1318 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 ALPK3Q96L96 1907 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 PATL2C9JE40 543 aaKnown RBP18.34■□□□□ 0.53
SKA3-204ENST00000462482 PDE4BQ07343 736 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 REPS2Q8NFH8 660 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 SYNPO2Q9UMS6 1093 aa18.34■□□□□ 0.53
SKA3-204ENST00000462482 PRDM1O75626 825 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 TSPY3P0CV98 308 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 TSPY8P0CW00 308 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 SNX17Q15036 470 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 PPP4R3BQ5MIZ7 849 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 C1orf53Q5VUE5 145 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 CPXCR1Q8N123 301 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 KIFC2Q96AC6 838 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 FSD1Q9BTV5 496 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 FBXO40Q9UH90 709 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 FEM1BQ9UK73 627 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 FAM184BQ9ULE4 1060 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 PHF24Q9UPV7 400 aa18.33■□□□□ 0.52
SKA3-204ENST00000462482 DLL1O00548 723 aa18.32■□□□□ 0.52
SKA3-204ENST00000462482 TTLL1O95922 423 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms