RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 PRPF40BQ6NWY9 871 aaKnown RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 FOXD4L3Q6VB84 417 aaPredicted RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 HS2ST1Q7LGA3 356 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 FILIP1Q7Z7B0 1213 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 TICAM2Q86XR7 235 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 CKAP2LQ8IYA6 745 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 KLHDC7BQ96G42 594 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 IFT57Q9NWB7 429 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 CHPF2Q9P2E5 772 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 KIAA0232Q92628 1395 aa6□□□□□ -1.45
CSMD3-205ENST00000462254 SIPA1L3O60292 1781 aaPredicted RBP6□□□□□ -1.45
CSMD3-205ENST00000462254 NCAPD2Q15021 1401 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 LRRC37A3O60309 1634 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 LRP6O75581 1613 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 COL5A2P05997 1499 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-205ENST00000462254 ADAM11O75078 769 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 WISP1O95388 367 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 APBA3O96018 575 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 ESRRAP11474 423 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-205ENST00000462254 ITPKAP23677 461 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 CD68P34810 354 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-205ENST00000462254 PCDH1Q08174 1060 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 IKBKEQ14164 716 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 GPAT2Q6NUI2 795 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 FAM117BQ6P1L5 589 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 TMED8Q6PL24 325 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-205ENST00000462254 IGF2-ASQ6U949 168 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 IP6K1Q92551 441 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 LENG1Q96BZ8 264 aaPredicted RBP5.99□□□□□ -1.45
CSMD3-205ENST00000462254 SEC31BQ9NQW1 1179 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 FAN1Q9Y2M0 1017 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 PRKAB1Q9Y478 270 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 IGSF1Q8N6C5 1336 aa5.99□□□□□ -1.45
CSMD3-205ENST00000462254 ADAMTS7Q9UKP4 1686 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 KDRP35968 1356 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 ITGB4P16144 1822 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 CCDC194A0A1B0GVG4 234 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 U2SURPO15042 1029 aaKnown RBP5.98□□□□□ -1.45
CSMD3-205ENST00000462254 DNAJC6O75061 913 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 FCGRTP55899 365 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 HNRNPUQ00839 825 aaKnown RBP eCLIP5.98□□□□□ -1.45
CSMD3-205ENST00000462254 CHRNA2Q15822 529 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 PLEKHG6Q3KR16 790 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 PLEKHG4Q58EX7 1191 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 MAP4K3Q8IVH8 894 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 CCDC146Q8IYE0 955 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 RPUSD2Q8IZ73 545 aaKnown RBP5.98□□□□□ -1.45
CSMD3-205ENST00000462254 MORC4Q8TE76 937 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 IRF2BPLQ9H1B7 796 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 CLEC4MQ9H2X3 399 aaPredicted RBP5.98□□□□□ -1.45
CSMD3-205ENST00000462254 ZNF576Q9H609 170 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 PRDM16Q9HAZ2 1276 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 SPC25Q9HBM1 224 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 USP21Q9UK80 565 aa5.98□□□□□ -1.45
CSMD3-205ENST00000462254 KAT6BQ8WYB5 2073 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 JCADQ9P266 1359 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 C9orf172C9J069 976 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 ALX3O95076 343 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 MAP4K4O95819 1239 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-205ENST00000462254 PROCP04070 461 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 HMOX1P09601 288 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 U2AF1L5P0DN76 240 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-205ENST00000462254 HSPA1LP34931 641 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 NLRP12P59046 1061 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 U2AF1Q01081 240 aaKnown RBP eCLIP5.97□□□□□ -1.45
CSMD3-205ENST00000462254 C19orf57Q0VDD7 668 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 FAAP100Q0VG06 881 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 MBTPS1Q14703 1052 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 SUZ12Q15022 739 aaKnown RBP5.97□□□□□ -1.45
CSMD3-205ENST00000462254 KLHL23Q8NBE8 558 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 UBASH3BQ8TF42 649 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 LTV1Q96GA3 475 aaPredicted RBP5.97□□□□□ -1.45
CSMD3-205ENST00000462254 PLEKHF1Q96S99 279 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 SPOCK3Q9BQ16 436 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 NUDCQ9Y266 331 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 BRWD3Q6RI45 1802 aa5.97□□□□□ -1.45
CSMD3-205ENST00000462254 TOGARAM1Q9Y4F4 1720 aa5.96□□□□□ -1.45
CSMD3-205ENST00000462254 KDM3BQ7LBC6 1761 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 SLIT2O94813 1529 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 EIF4BP23588 611 aaKnown RBP5.96□□□□□ -1.46
CSMD3-205ENST00000462254 PRKAR2BP31323 418 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 ZNF157P51786 506 aaPredicted RBP5.96□□□□□ -1.46
CSMD3-205ENST00000462254 ADGRE1Q14246 886 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 AGGF1Q8N302 714 aaeCLIP5.96□□□□□ -1.46
CSMD3-205ENST00000462254 USHBP1Q8N6Y0 703 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 C3orf58Q8NDZ4 430 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 RASGRP4Q8TDF6 673 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 ANKRD24Q8TF21 1146 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 WNT8BQ93098 351 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 GPRASP2Q96D09 838 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 NACC1Q96RE7 527 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 OSGEPQ9NPF4 335 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 PRDM11Q9NQV5 511 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 GGT7Q9UJ14 662 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 SPG7Q9UQ90 795 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 ZBED9Q6R2W3 1325 aa5.96□□□□□ -1.46
CSMD3-205ENST00000462254 MEGF6O75095 1541 aa5.95□□□□□ -1.46
CSMD3-205ENST00000462254 SBF2Q86WG5 1849 aa5.95□□□□□ -1.46
CSMD3-205ENST00000462254 FAM83GA6ND36 823 aa5.95□□□□□ -1.46
CSMD3-205ENST00000462254 APAF1O14727 1248 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms