RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MEGF11A6BM72 1044 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 NEFLP07196 543 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 MMP10P09238 476 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 PDE4CQ08493 712 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 ZNF423Q2M1K9 1284 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 NBPF11Q86T75 865 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 FAM20CQ8IXL6 584 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 NIF3L1Q9GZT8 377 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 KCNF1Q9H3M0 494 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 SOX17Q9H6I2 414 aaPredicted RBP9.75□□□□□ -0.85
USP54-208ENST00000461520 SLC52A2Q9HAB3 445 aa9.75□□□□□ -0.85
USP54-208ENST00000461520 COL5A3P25940 1745 aaPredicted RBP9.74□□□□□ -0.85
USP54-208ENST00000461520 GPR182O15218 404 aa9.74□□□□□ -0.85
USP54-208ENST00000461520 CPNE3O75131 537 aaKnown RBP9.74□□□□□ -0.85
USP54-208ENST00000461520 HMOX1P09601 288 aa9.74□□□□□ -0.85
USP54-208ENST00000461520 RFC4P35249 363 aa9.74□□□□□ -0.85
USP54-208ENST00000461520 PCDH1Q08174 1060 aa9.74□□□□□ -0.85
USP54-208ENST00000461520 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.74□□□□□ -0.85
USP54-208ENST00000461520 C12orf50Q8NA57 414 aaPredicted RBP9.74□□□□□ -0.85
USP54-208ENST00000461520 NPHS2Q9NP85 383 aa9.74□□□□□ -0.85
USP54-208ENST00000461520 N4BP2Q86UW6 1770 aaPredicted RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 RNMTO43148 476 aaKnown RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 IGHA2P01877 340 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 GYS1P13807 737 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 SSTR4P31391 388 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 CRKLP46109 303 aaKnown RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 TGFB2P61812 414 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 NFIAQ12857 509 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 MTHFSDQ2M296 383 aaKnown RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 KIAA0319Q5VV43 1072 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 BEND4Q6ZU67 534 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 CITED4Q96RK1 184 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 TMPRSS13Q9BYE2 586 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 CLEC4MQ9H2X3 399 aaPredicted RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 LGR6Q9HBX8 967 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 CICQ96RK0 1608 aaPredicted RBP9.73□□□□□ -0.85
USP54-208ENST00000461520 SCN11AQ9UI33 1791 aa9.73□□□□□ -0.85
USP54-208ENST00000461520 MRC1P22897 1456 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 EIF1AYO14602 144 aaKnown RBP9.72□□□□□ -0.85
USP54-208ENST00000461520 GSC2O15499 205 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 RNF43Q68DV7 783 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 CLEC10AQ8IUN9 316 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 FAM83CQ9BQN1 747 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 EHD4Q9H223 541 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 KIAA1551Q9HCM1 1747 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 KIF13BQ9NQT8 1826 aa9.72□□□□□ -0.85
USP54-208ENST00000461520 SOWAHDA6NJG2 315 aa9.71□□□□□ -0.86
USP54-208ENST00000461520 GAS2O43903 313 aaKnown RBP9.71□□□□□ -0.86
USP54-208ENST00000461520 TGFB1P01137 390 aa9.71□□□□□ -0.86
USP54-208ENST00000461520 DRD2P14416 443 aa9.71□□□□□ -0.86
USP54-208ENST00000461520 SMG8Q8ND04 991 aaKnown RBP9.71□□□□□ -0.86
USP54-208ENST00000461520 USP42Q9H9J4 1324 aaKnown RBP9.71□□□□□ -0.86
USP54-208ENST00000461520 C10orf71Q711Q0 1435 aa9.71□□□□□ -0.86
USP54-208ENST00000461520 PXDNLA1KZ92 1463 aa9.71□□□□□ -0.86
USP54-208ENST00000461520 COL3A1P02461 1466 aaPredicted RBP9.71□□□□□ -0.86
USP54-208ENST00000461520 MED26O95402 600 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 SLC39A6Q13433 755 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 SGO2Q562F6 1265 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 EXOSC6Q5RKV6 272 aaKnown RBP9.7□□□□□ -0.86
USP54-208ENST00000461520 INTS5Q6P9B9 1019 aaKnown RBP9.7□□□□□ -0.86
USP54-208ENST00000461520 ZDHHC13Q8IUH4 622 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 DNAJC10Q8IXB1 793 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 CCDC74AQ96AQ1 378 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 NRSN2Q9GZP1 204 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 CYP4F12Q9HCS2 524 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 PCMTD2Q9NV79 361 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 ADAMTS7Q9UKP4 1686 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 TJP1Q07157 1748 aa9.7□□□□□ -0.86
USP54-208ENST00000461520 U2SURPO15042 1029 aaKnown RBP9.69□□□□□ -0.86
USP54-208ENST00000461520 TIAF1O95411 115 aa9.69□□□□□ -0.86
USP54-208ENST00000461520 C4AP0C0L4 1744 aa9.69□□□□□ -0.86
USP54-208ENST00000461520 CYP19A1P11511 503 aaPredicted RBP9.69□□□□□ -0.86
USP54-208ENST00000461520 CNGB1Q14028 1251 aaPredicted RBP9.69□□□□□ -0.86
USP54-208ENST00000461520 MYH14Q7Z406 1995 aaKnown RBP9.69□□□□□ -0.86
USP54-208ENST00000461520 CFAP53Q96M91 514 aa9.69□□□□□ -0.86
USP54-208ENST00000461520 SUGCTQ9HAC7 445 aa9.69□□□□□ -0.86
USP54-208ENST00000461520 BRCA1P38398 1863 aaKnown RBP9.68□□□□□ -0.86
USP54-208ENST00000461520 KCPQ6ZWJ8 1503 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 SOS1Q07889 1333 aaPredicted RBP9.68□□□□□ -0.86
USP54-208ENST00000461520 A0A0G2JLW4 131 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 GNAT3A8MTJ3 354 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 CTSBP07858 339 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 MAOBP27338 520 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 MAP4P27816 1152 aaKnown RBP9.68□□□□□ -0.86
USP54-208ENST00000461520 TTC5Q8N0Z6 440 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 DBNDD2Q9BQY9 259 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 BIN2Q9UBW5 565 aaPredicted RBP9.68□□□□□ -0.86
USP54-208ENST00000461520 SRP68Q9UHB9 627 aaKnown RBP9.68□□□□□ -0.86
USP54-208ENST00000461520 HIF3AQ9Y2N7 669 aa9.68□□□□□ -0.86
USP54-208ENST00000461520 DPEP1P16444 411 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 TM4SF1P30408 202 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 CD97P48960 835 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 DDR1Q08345 913 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 TEFQ10587 303 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 EPS8L3Q8TE67 593 aaKnown RBP9.67□□□□□ -0.86
USP54-208ENST00000461520 RBCK1Q9BYM8 510 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 DNAJC25Q9H1X3 360 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 ZNF576Q9H609 170 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 NARFQ9UHQ1 456 aa9.67□□□□□ -0.86
USP54-208ENST00000461520 NUDCQ9Y266 331 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms