RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 USP17L22D6RA61 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L17D6RBQ6 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L19D6RCP7 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L20D6RJB6 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 RAD21O60216 631 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 CYP2C8P10632 490 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 MAP2K1Q02750 393 aaPredicted RBP13.21□□□□□ -0.29
SSBP1-202ENST00000461433 USP17L24Q0WX57 530 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 TROAPQ12815 778 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 OTUD7BQ6GQQ9 843 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 Q6ZUG5 572 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 TMTC2Q8N394 836 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 CHMP4CQ96CF2 233 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 CFHR5Q9BXR6 569 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 R3HDMLQ9H3Y0 253 aa13.21□□□□□ -0.29
SSBP1-202ENST00000461433 UPF2Q9HAU5 1272 aaKnown RBP13.21□□□□□ -0.29
SSBP1-202ENST00000461433 ALDH1A1P00352 501 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 TOB2Q14106 344 aaPredicted RBP13.21□□□□□ -0.3
SSBP1-202ENST00000461433 DCAF4Q8WV16 495 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 P2RX7Q99572 595 aaKnown RBP13.21□□□□□ -0.3
SSBP1-202ENST00000461433 FBXO28Q9NVF7 368 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 BRPF3Q9ULD4 1205 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 MTMR7Q9Y216 660 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 ADGRA2Q96PE1 1338 aa13.21□□□□□ -0.3
SSBP1-202ENST00000461433 CA12O43570 354 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 TRPA1O75762 1119 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 BMP3P12645 472 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 SLC1A4P43007 532 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 PABPC4Q13310 644 aaKnown RBP eCLIP13.2□□□□□ -0.3
SSBP1-202ENST00000461433 CRHR2Q13324 411 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 KCTD1Q719H9 257 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 TANGO6Q9C0B7 1094 aa13.2□□□□□ -0.3
SSBP1-202ENST00000461433 ALDH8A1Q9H2A2 487 aaPredicted RBP13.2□□□□□ -0.3
SSBP1-202ENST00000461433 COL11A1P12107 1806 aaPredicted RBP13.19□□□□□ -0.3
SSBP1-202ENST00000461433 A0A0G2JMZ2 1700 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 OSBPP22059 807 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 EVCP57679 992 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 ZNF543Q08ER8 600 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 COG2Q14746 738 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 TAF1CQ15572 869 aaPredicted RBP13.19□□□□□ -0.3
SSBP1-202ENST00000461433 TTBK2Q6IQ55 1244 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 ZNF654Q8IZM8 581 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 BRF1Q92994 677 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 MYL10Q9BUA6 226 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 PDRG1Q9NUG6 133 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 SAGE1Q9NXZ1 904 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 ADAMTS5Q9UNA0 930 aa13.19□□□□□ -0.3
SSBP1-202ENST00000461433 FRMPD2Q68DX3 1309 aaPredicted RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PALM3A6NDB9 673 aaPredicted RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 CCDC69A6NI79 296 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 SPDYE16A6NNV3 312 aaPredicted RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 TMEM232C9JQI7 657 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 TLR2O60603 784 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PLA2G6O60733 806 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 TBC1D8O95759 1140 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 GOLGA8HP0CJ92 632 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 DSG3P32926 999 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 HERVK_113P62684 666 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 IRX3P78415 501 aaPredicted RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 APOBRQ0VD83 1088 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 GRM4Q14833 912 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 APOA5Q6Q788 366 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 BTNL9Q6UXG8 535 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 LBX2Q6XYB7 198 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 NFXL1Q6ZNB6 911 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 CATIPQ7Z7H3 387 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 STAG2Q8N3U4 1231 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PARK7Q99497 189 aaKnown RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 ZFYVE28Q9HCC9 887 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 MAD2L2Q9UI95 211 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 FEM1BQ9UK73 627 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PNMA3Q9UL41 463 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 MYPNQ86TC9 1320 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PEX10O60683 326 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 FLOT1O75955 427 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 DDAH1O94760 285 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 RXRAP19793 462 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 NEK4P51957 841 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 MAP3K14Q99558 947 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 LARP6Q9BRS8 491 aaKnown RBP13.18□□□□□ -0.3
SSBP1-202ENST00000461433 GPCPD1Q9NPB8 672 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 HOXC10Q9NYD6 342 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 RBPJLQ9UBG7 517 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 PPP1R9AQ9ULJ8 1098 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 SLC12A7Q9Y666 1083 aa13.18□□□□□ -0.3
SSBP1-202ENST00000461433 KLF18A0A0U1RQI7 1052 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 PARP1P09874 1014 aaKnown RBP13.17□□□□□ -0.3
SSBP1-202ENST00000461433 BCRP11274 1271 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 SLC16A2P36021 539 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 STAT2P52630 851 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 AK2P54819 239 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 CCDC96Q2M329 555 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 SLC35G1Q2M3R5 365 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 ASPRV1Q53RT3 343 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 GPATCH4Q5T3I0 446 aaKnown RBP13.17□□□□□ -0.3
SSBP1-202ENST00000461433 C17orf99Q6UX52 265 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 RAB11FIP4Q86YS3 637 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 PRPF38AQ8NAV1 312 aaKnown RBP13.17□□□□□ -0.3
SSBP1-202ENST00000461433 ATG4CQ96DT6 458 aa13.17□□□□□ -0.3
SSBP1-202ENST00000461433 SLF1Q9BQI6 1058 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms