RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RUFY2Q8WXA3 655 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 A0A0G2JMZ2 1700 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 PLIN4Q96Q06 1357 aa22.11■■□□□ 1.13
USP39-209ENST00000458268 CHMLP26374 656 aa22.1■■□□□ 1.13
USP39-209ENST00000458268 IKQ13123 557 aaPredicted RBP22.1■■□□□ 1.13
USP39-209ENST00000458268 NUDT12Q9BQG2 462 aa22.1■■□□□ 1.13
USP39-209ENST00000458268 CTDP1Q9Y5B0 961 aaPredicted RBP22.1■■□□□ 1.13
USP39-209ENST00000458268 IVNS1ABPQ9Y6Y0 642 aa22.1■■□□□ 1.13
USP39-209ENST00000458268 KIAA0100Q14667 2235 aaKnown RBP22.09■■□□□ 1.13
USP39-209ENST00000458268 ORC4O43929 436 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 INHAP05111 366 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 CENPBP07199 599 aaPredicted RBP22.09■■□□□ 1.13
USP39-209ENST00000458268 AKNAD1Q5T1N1 836 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 SLFN13Q68D06 897 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 LBX2Q6XYB7 198 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 NCAPG2Q86XI2 1143 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 NBPF3Q9H094 633 aa22.09■■□□□ 1.13
USP39-209ENST00000458268 NEDD4P46934 1319 aa22.08■■□□□ 1.13
USP39-209ENST00000458268 IMMTQ16891 758 aaKnown RBP22.08■■□□□ 1.13
USP39-209ENST00000458268 KIFC2Q96AC6 838 aa22.08■■□□□ 1.13
USP39-209ENST00000458268 DSCC1Q9BVC3 393 aa22.08■■□□□ 1.13
USP39-209ENST00000458268 MOV10L1Q9BXT6 1211 aaKnown RBP22.08■■□□□ 1.13
USP39-209ENST00000458268 SPATC1LQ9H0A9 340 aa22.08■■□□□ 1.13
USP39-209ENST00000458268 RNF41Q9H4P4 317 aaPredicted RBP22.08■■□□□ 1.13
USP39-209ENST00000458268 HTTP42858 3142 aa22.08■■□□□ 1.12
USP39-209ENST00000458268 RBBP6Q7Z6E9 1792 aaKnown RBP22.07■■□□□ 1.12
USP39-209ENST00000458268 CCL5P13501 91 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 EN2P19622 333 aaPredicted RBP22.07■■□□□ 1.12
USP39-209ENST00000458268 IRF5Q13568 498 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 SOCS4Q8WXH5 440 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 SLF1Q9BQI6 1058 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 ZKSCAN3Q9BRR0 538 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 RNF208Q9H0X6 261 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 IL17RBQ9NRM6 502 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 GJD2Q9UKL4 321 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 PPP1R9AQ9ULJ8 1098 aa22.07■■□□□ 1.12
USP39-209ENST00000458268 RAD50Q92878 1312 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 ERCC3P19447 782 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 CCDC96Q2M329 555 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 PPP4R3BQ5MIZ7 849 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 RASGRP2Q7LDG7 609 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 MB21D1Q8N884 522 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 STAG1Q8WVM7 1258 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 UNC93B1Q9H1C4 597 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 CTNNA3Q9UI47 895 aa22.06■■□□□ 1.12
USP39-209ENST00000458268 BMP3P12645 472 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 MCCP23508 829 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 RGS2P41220 211 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 SLC1A4P43007 532 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 TRIM32Q13049 653 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 ESR2Q92731 530 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 MKL1Q969V6 931 aa22.05■■□□□ 1.12
USP39-209ENST00000458268 B4E1Z4 1266 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 TMEM232C9JQI7 657 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 KDM4AO75164 1064 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 ZKSCAN1P17029 563 aaPredicted RBP22.04■■□□□ 1.12
USP39-209ENST00000458268 TMEM132BQ14DG7 1078 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 CCL14Q16627 93 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 KCTD1Q719H9 257 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 CPXCR1Q8N123 301 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 GMCL1P1Q8NEA9 526 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 NKX2-3Q8TAU0 364 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 PXYLP1Q8TE99 480 aa22.04■■□□□ 1.12
USP39-209ENST00000458268 VWA5AO00534 786 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 HMGCRP04035 888 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 PTPREP23469 700 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 RGS19P49795 217 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 PTH1RQ03431 593 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 MAP2K5Q13163 448 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 TRIB2Q92519 343 aa22.03■■□□□ 1.12
USP39-209ENST00000458268 SLC15A5A6NIM6 579 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 ZBED4O75132 1171 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 FGRP09769 529 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 MORN1Q5T089 497 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 DPP9Q86TI2 863 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 PRPF38AQ8NAV1 312 aaKnown RBP22.02■■□□□ 1.12
USP39-209ENST00000458268 APBA2Q99767 749 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 FEM1BQ9UK73 627 aa22.02■■□□□ 1.12
USP39-209ENST00000458268 SGSM2O43147 1006 aa22.01■■□□□ 1.11
USP39-209ENST00000458268 TOP1P11387 765 aaKnown RBP22.01■■□□□ 1.11
USP39-209ENST00000458268 STAT3P40763 770 aa22.01■■□□□ 1.11
USP39-209ENST00000458268 SNRNP48Q6IEG0 339 aaKnown RBP22.01■■□□□ 1.11
USP39-209ENST00000458268 KIAA1211Q6ZU35 1233 aa22.01■■□□□ 1.11
USP39-209ENST00000458268 TMEM47Q9BQJ4 181 aa22.01■■□□□ 1.11
USP39-209ENST00000458268 RAVER2Q9HCJ3 691 aaKnown RBP22.01■■□□□ 1.11
USP39-209ENST00000458268 ZNFX1Q9P2E3 1918 aaKnown RBP22.01■■□□□ 1.11
USP39-209ENST00000458268 FRMPD2Q68DX3 1309 aaPredicted RBP22.01■■□□□ 1.11
USP39-209ENST00000458268 CENPFP49454 3210 aa22.01■■□□□ 1.11
USP39-209ENST00000458268 PCP11498 1178 aaKnown RBP22■■□□□ 1.11
USP39-209ENST00000458268 ADORA2AP29274 412 aa22■■□□□ 1.11
USP39-209ENST00000458268 STAT2P52630 851 aa22■■□□□ 1.11
USP39-209ENST00000458268 SNAP25P60880 206 aa22■■□□□ 1.11
USP39-209ENST00000458268 DEFB118Q96PH6 123 aa22■■□□□ 1.11
USP39-209ENST00000458268 MROH8Q9H579 483 aa22■■□□□ 1.11
USP39-209ENST00000458268 GPCPD1Q9NPB8 672 aa22■■□□□ 1.11
USP39-209ENST00000458268 SYNPO2Q9UMS6 1093 aa22■■□□□ 1.11
USP39-209ENST00000458268 PRKAR2AP13861 404 aaKnown RBP21.99■■□□□ 1.11
USP39-209ENST00000458268 IQCA1Q86XH1 822 aa21.99■■□□□ 1.11
USP39-209ENST00000458268 SHCBP1Q8NEM2 672 aa21.99■■□□□ 1.11
USP39-209ENST00000458268 GMCL1Q96IK5 515 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms