RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 SPECC1Q5M775 1068 aa13.4□□□□□ -0.26
SYNE2-207ENST00000458046 KIF18AQ8NI77 898 aa13.4□□□□□ -0.26
SYNE2-207ENST00000458046 AIDAQ96BJ3 306 aa13.4□□□□□ -0.26
SYNE2-207ENST00000458046 RANBP6O60518 1105 aaKnown RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 NAT1P18440 290 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 SFPQP23246 707 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 MAN1A1P33908 653 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 FANCCQ00597 558 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 TTF1Q15361 905 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 TMEM67Q5HYA8 995 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 CPLX2Q6PUV4 134 aaKnown RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 IGDCC4Q8TDY8 1250 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 AGBL1Q96MI9 1066 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 ZHX1Q9UKY1 873 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 COL5A2P05997 1499 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 GOLGA8AA7E2F4 631 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 PRSS47A8MTI9 375 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 CDKL5O76039 1030 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 UBE3CQ15386 1083 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 CCDC93Q567U6 631 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 ARMC3Q5W041 872 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 VGLL2Q8N8G2 317 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 STRBPQ96SI9 672 aaKnown RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 SLC26A6Q9BXS9 759 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 TEX13AQ9BXU3 409 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 OSBPL2Q9H1P3 480 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 BIN2Q9UBW5 565 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-207ENST00000458046 WDR19Q8NEZ3 1342 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 SPEF2Q9C093 1822 aa13.39□□□□□ -0.27
SYNE2-207ENST00000458046 PTGER2P43116 358 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 TRIM29Q14134 588 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 MRPL58Q14197 206 aaKnown RBP13.38□□□□□ -0.27
SYNE2-207ENST00000458046 PTPAQ15257 358 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 DPF2Q92785 391 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 FAM217BQ9NTX9 383 aaPredicted RBP13.38□□□□□ -0.27
SYNE2-207ENST00000458046 ZSWIM5Q9P217 1185 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 CGNQ9P2M7 1197 aaKnown RBP13.38□□□□□ -0.27
SYNE2-207ENST00000458046 LZTS1Q9Y250 596 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 IFIT3O14879 490 aaKnown RBP13.38□□□□□ -0.27
SYNE2-207ENST00000458046 DMTNQ08495 405 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 NTRK3Q16288 839 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 HSP90AA4PQ58FG1 418 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 PPP1R13BQ96KQ4 1090 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 MAP3K14Q99558 947 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 ZKSCAN3Q9BRR0 538 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 HSD3B7Q9H2F3 369 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 LY9Q9HBG7 655 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 SRCAPQ6ZRS2 3230 aa13.38□□□□□ -0.27
SYNE2-207ENST00000458046 TCRBV5S4A2TA0A5A2 114 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SERPINC1P01008 464 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 FOSP01100 380 aaPredicted RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 FLT3P36888 993 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 GOLGA8FQ08AF8 430 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 GOLGA8DPQ0D2H9 430 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 RRP12Q5JTH9 1297 aaKnown RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 DCAF8Q5TAQ9 597 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SYT10Q6XYQ8 523 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SUGP1Q8IWZ8 645 aaKnown RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 MAGEB6Q8N7X4 407 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 CCDC150Q8NCX0 1101 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 ARMT1Q9H993 441 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 TOMM22Q9NS69 142 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 HPSEQ9Y251 543 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 TACC3Q9Y6A5 838 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 ABCC12Q96J65 1359 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 FOXN1O15353 648 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 PPP6R2O75170 966 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 MBD4O95243 580 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 UBASH3AP57075 661 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 RBL2Q08999 1139 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 MAPRE1Q15691 268 aaKnown RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 UBN2Q6ZU65 1347 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 PODNQ7Z5L7 613 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 FOXP4Q8IVH2 680 aaPredicted RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 UBR2Q8IWV8 1755 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 IFNL3Q8IZI9 196 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 CMTR1Q8N1G2 835 aaKnown RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SLC4A9Q96Q91 983 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 FEZ1Q99689 392 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 ZBTB1Q9Y2K1 713 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SLC12A7Q9Y666 1083 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 PARP4Q9UKK3 1724 aaKnown RBP13.37□□□□□ -0.27
SYNE2-207ENST00000458046 CDHR2Q9BYE9 1310 aa13.37□□□□□ -0.27
SYNE2-207ENST00000458046 SCAMP3O14828 347 aaKnown RBP13.36□□□□□ -0.27
SYNE2-207ENST00000458046 PRKAB2O43741 272 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 GUCY1A2P33402 732 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 ELF2Q15723 593 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 TMEM87BQ96K49 555 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 TIGD1Q96MW7 591 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 NAPBQ9H115 298 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 EPB41L4AQ9HCS5 686 aaPredicted RBP13.36□□□□□ -0.27
SYNE2-207ENST00000458046 OGFRQ9NZT2 677 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 TUBE1Q9UJT0 475 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 INTUQ9ULD6 942 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 KCNJ14Q9UNX9 436 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 GJA3Q9Y6H8 435 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 BTBD18B2RXH4 712 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 SSRP1Q08945 709 aaKnown RBP13.36□□□□□ -0.27
SYNE2-207ENST00000458046 CFAP100Q494V2 611 aa13.36□□□□□ -0.27
SYNE2-207ENST00000458046 KMT5BQ4FZB7 885 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms