RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 KIF2CQ99661 725 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 ADAMTS10Q9H324 1103 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 EPB41L4BQ9H329 900 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 NSUN3Q9H649 340 aaKnown RBP6.42□□□□□ -1.38
USP40-209ENST00000452724 GMIPQ9P107 970 aa6.42□□□□□ -1.38
USP40-209ENST00000452724 WASH4PA8MWX3 477 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 RGS13O14921 159 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 TSPAN15O95858 294 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 DUSP4Q13115 394 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 NAALADL2Q58DX5 795 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 VPS37DQ86XT2 251 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 SPPL2CQ8IUH8 684 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 SEC16BQ96JE7 1060 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 C8orf37Q96NL8 207 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 FERD3LQ96RJ6 166 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 DIRC2Q96SL1 478 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 DCP1AQ9NPI6 582 aaPredicted RBP6.41□□□□□ -1.38
USP40-209ENST00000452724 PPT2Q9UMR5 302 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 PCDHA11Q9Y5I1 949 aa6.41□□□□□ -1.38
USP40-209ENST00000452724 FITM1A5D6W6 292 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 NFIBO00712 420 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 LRRN2O75325 713 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 NASPP49321 788 aaPredicted RBP6.4□□□□□ -1.38
USP40-209ENST00000452724 CHRNEQ04844 493 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 ANKLE2Q86XL3 938 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 SLC43A3Q8NBI5 491 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 ENOX1Q8TC92 643 aaKnown RBP6.4□□□□□ -1.38
USP40-209ENST00000452724 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP40-209ENST00000452724 ZNRF3Q9ULT6 936 aa6.4□□□□□ -1.38
USP40-209ENST00000452724 DNAJA2O60884 412 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 IMPDH2P12268 514 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 ATF4P18848 351 aaPredicted RBP6.39□□□□□ -1.39
USP40-209ENST00000452724 ERVFC1P60507 584 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 KRTAP19-4Q3LI73 84 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 ARSHQ5FYA8 562 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 FBXW10Q5XX13 1052 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 CCDC81Q6ZN84 652 aa6.39□□□□□ -1.39
USP40-209ENST00000452724 ZSCAN18Q8TBC5 510 aaPredicted RBP6.39□□□□□ -1.39
USP40-209ENST00000452724 SSU72P8A0A1W2PR75 194 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 SLC22A31A6NKX4 558 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 ZGLP1P0C6A0 271 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 TMEM253P0C7T8 217 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 DNAJA1P31689 397 aaKnown RBP6.38□□□□□ -1.39
USP40-209ENST00000452724 ARID5AQ03989 594 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 NMIQ13287 307 aaPredicted RBP6.38□□□□□ -1.39
USP40-209ENST00000452724 LRRFIP1Q32MZ4 808 aaKnown RBP6.38□□□□□ -1.39
USP40-209ENST00000452724 SLC6A17Q9H1V8 727 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 ANTXR1Q9H6X2 564 aa6.38□□□□□ -1.39
USP40-209ENST00000452724 CWC22Q9HCG8 908 aaKnown RBP6.38□□□□□ -1.39
USP40-209ENST00000452724 MEIS3P2A8K0S8 358 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 CCNFP41002 786 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 RANGAP1P46060 587 aaPredicted RBP6.37□□□□□ -1.39
USP40-209ENST00000452724 NR0B2Q15466 257 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 OVOS1Q6IE37 1185 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 RNF111Q6ZNA4 994 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 ANKS4BQ8N8V4 417 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 SYTL5Q8TDW5 730 aaPredicted RBP6.37□□□□□ -1.39
USP40-209ENST00000452724 CPLX3Q8WVH0 158 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 SLC26A8Q96RN1 970 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 SRRTQ9BXP5 876 aaKnown RBP6.37□□□□□ -1.39
USP40-209ENST00000452724 STRIP2Q9ULQ0 834 aa6.37□□□□□ -1.39
USP40-209ENST00000452724 EIF6P56537 245 aaKnown RBP6.36□□□□□ -1.39
USP40-209ENST00000452724 SNX17Q15036 470 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 CDCP2Q5VXM1 449 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 IRF2BP1Q8IU81 584 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 DAGLBQ8NCG7 672 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 VWCEQ96DN2 955 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 ATG4CQ96DT6 458 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 CRBNQ96SW2 442 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 GMLQ99445 158 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.36□□□□□ -1.39
USP40-209ENST00000452724 RNF32Q9H0A6 362 aa6.36□□□□□ -1.39
USP40-209ENST00000452724 KRTAP4-8A0A0G2JLE6 195 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 SHISA3A0PJX4 238 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 RBAK-RBAKDNI3L0D1 243 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 CLEC3AO75596 197 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 UBOX5O94941 541 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 FGRP09769 529 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 TRHRP34981 398 aaPredicted RBP6.35□□□□□ -1.39
USP40-209ENST00000452724 PCBP3P57721 371 aaKnown RBP6.35□□□□□ -1.39
USP40-209ENST00000452724 TEKQ02763 1124 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 NLRC3Q7RTR2 1065 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 LSRQ86X29 649 aaPredicted RBP6.35□□□□□ -1.39
USP40-209ENST00000452724 MCF2L2Q86YR7 1114 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 ZNF655Q8N720 491 aaPredicted RBP6.35□□□□□ -1.39
USP40-209ENST00000452724 RBBP8NLQ8NC74 664 aaPredicted RBP6.35□□□□□ -1.39
USP40-209ENST00000452724 C19orf44Q9H6X5 657 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 CNNM2Q9H8M5 875 aa6.35□□□□□ -1.39
USP40-209ENST00000452724 TCAF2A6NFQ2 919 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 SSBP05455 408 aaKnown RBP eCLIP6.34□□□□□ -1.39
USP40-209ENST00000452724 C1QTNF9P0C862 333 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 NME1P15531 152 aaKnown RBP6.34□□□□□ -1.39
USP40-209ENST00000452724 GIPRP48546 466 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 NBPF12Q5TAG4 269 aaPredicted RBP6.34□□□□□ -1.39
USP40-209ENST00000452724 OR6P1Q8NGX9 317 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 SHDQ96IW2 340 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 HDAC8Q9BY41 377 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 GPR160Q9UJ42 338 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 ZMYM5Q9UJ78 669 aa6.34□□□□□ -1.39
USP40-209ENST00000452724 ENDOUP21128 410 aaKnown RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms