RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	TMEM179	Q6ZVK1	233 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	PLPP6	Q8IY26	295 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	FSD1	Q9BTV5	496 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	TANGO6	Q9C0B7	1094 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	PORCN	Q9H237	461 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	RBPJL	Q9UBG7	517 aa		10.41	□□□□□ -0.74
RFX3-209	ENST00000451859	MINDY4B	A8MYZ0	360 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	ERC2	O15083	957 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	RNF113A	O15541	343 aa	Known RBP	10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	GPAA1	O43292	621 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	RAD21	O60216	631 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	APP	P05067	770 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	GJB1	P08034	283 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	TDO2	P48775	406 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	ICA1	Q05084	483 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	TRIM32	Q13049	653 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	IRF5	Q13568	498 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859		Q3C1V9	767 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	ANKRD45	Q5TZF3	282 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	CTR9	Q6PD62	1173 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	CATSPERG	Q6ZRH7	1159 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	SPICE1	Q8N0Z3	855 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	PXYLP1	Q8TE99	480 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	U2AF1L4	Q8WU68	220 aa	Known RBP	10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	APPBP2	Q92624	585 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	OSBP2	Q969R2	916 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	C12orf42	Q96LP6	360 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	DEFB118	Q96PH6	123 aa		10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	STRBP	Q96SI9	672 aa	Known RBP	10.4	□□□□□ -0.74
RFX3-209	ENST00000451859	MCM3AP	O60318	1980 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	TTC41P	Q6P2S7	1318 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	CNMD	O75829	334 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	HMGCR	P04035	888 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	MX1	P20591	662 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	MAPK4	P31152	587 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	GJA8	P48165	433 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	PTPN5	P54829	565 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	KIAA1755	Q5JYT7	1200 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	C16orf86	Q6ZW13	317 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	NKX2-3	Q8TAU0	364 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	PI4K2B	Q8TCG2	481 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	SEC62	Q99442	399 aa	Known RBP	10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	NUDT12	Q9BQG2	462 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	ARHGEF10L	Q9HCE6	1279 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	ARPP21	Q9UBL0	812 aa	Predicted RBP	10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	GJD2	Q9UKL4	321 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	SMCHD1	A6NHR9	2005 aa		10.39	□□□□□ -0.75
RFX3-209	ENST00000451859	ZNF236	Q9UL36	1845 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	GSG1L2	A8MUP6	293 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	GLRX3	O76003	335 aa	Known RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	FARP2	O94887	1054 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	TFRC	P02786	760 aa	Known RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	ZFY	P08048	801 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	EEF2	P13639	858 aa	Known RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	ZKSCAN1	P17029	563 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	PLS1	Q14651	629 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	GPR142	Q7Z601	462 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	PLEKHH3	Q7Z736	793 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	SOCS4	Q8WXH5	440 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	TRIB2	Q92519	343 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	DPF3	Q92784	378 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	MKNK2	Q9HBH9	465 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	GPHN	Q9NQX3	736 aa	Predicted RBP	10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	BTBD7	Q9P203	1132 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	RABGAP1	Q9Y3P9	1069 aa		10.38	□□□□□ -0.75
RFX3-209	ENST00000451859	PRDM1	O75626	825 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	FLOT1	O75955	427 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	SGPL1	O95470	568 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	CCNA1	P78396	465 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	DSG2	Q14126	1118 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	CCL14	Q16627	93 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	LRRFIP1	Q32MZ4	808 aa	Known RBP	10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	B4GALNT3	Q6L9W6	998 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	DNAH12	Q6ZR08	3092 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	CCDC129	Q6ZRS4	1044 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	SIAH1	Q8IUQ4	282 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	CCDC17	Q96LX7	622 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	SH2D4A	Q9H788	454 aa		10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	HMX1	Q9NP08	348 aa	Predicted RBP	10.37	□□□□□ -0.75
RFX3-209	ENST00000451859	TRIOBP	Q9H2D6	2365 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	LAMA4	Q16363	1823 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	RASA1	P20936	1047 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	RGS2	P41220	211 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	MORN1	Q5T089	497 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	EXOC6	Q8TAG9	804 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	ATG4C	Q96DT6	458 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	LNPK	Q9C0E8	428 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	VCPKMT	Q9H867	229 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	PAK6	Q9NQU5	681 aa	Predicted RBP	10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	TMX2	Q9Y320	296 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	IVNS1ABP	Q9Y6Y0	642 aa		10.36	□□□□□ -0.75
RFX3-209	ENST00000451859	RPTOR	Q8N122	1335 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	SALL3	Q9BXA9	1300 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859	MYH6	P13533	1939 aa		10.35	□□□□□ -0.75
RFX3-209	ENST00000451859		H0YGN5	161 aa		10.35	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms