RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 RFX5P48382 616 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-213ENST00000448038 TPH2Q8IWU9 490 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 MLKLQ8NB16 471 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 IFT74Q96LB3 600 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 PIGSQ96S52 555 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 SERTAD1Q9UHV2 236 aa8.31□□□□□ -1.08
SYNE1-213ENST00000448038 PFKFB1P16118 471 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NCAPG2Q86XI2 1143 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 DGKHQ86XP1 1220 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TTC14Q96N46 770 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NT5C3AQ9H0P0 336 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 SPON1Q9HCB6 807 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 FOSP01100 380 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NT5C2P49902 561 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 PTGDRQ13258 359 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 DCAF17Q5H9S7 520 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NEK11Q8NG66 645 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 FOXP1Q9H334 677 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 DDX25Q9UHL0 483 aaKnown RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 FRMD4BQ9Y2L6 1034 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 CLIC4Q9Y696 253 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TNS2Q63HR2 1409 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NEDD4P46934 1319 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 GSG1L2A8MUP6 293 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TMCO5BA8MYB1 307 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 PTGS1P23219 599 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 ARID5AQ03989 594 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 SNW1Q13573 536 aaKnown RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 DEFB132Q7Z7B7 95 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 RASGRP4Q8TDF6 673 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 ZNF526Q8TF50 670 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 BLZF1Q9H2G9 400 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 PCDHA4Q9UN74 947 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 UQCRHLA0A096LP55 91 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 GH2P01242 217 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 UQCRHP07919 91 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 STAT2P52630 851 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 ALX1Q15699 326 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TMEM179Q6ZVK1 233 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 MIER3Q7Z3K6 550 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NEBLO76041 1014 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 EPB41P11171 864 aaKnown RBP8.3□□□□□ -1.08
SYNE1-213ENST00000448038 PAFAH1B1P43034 410 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 NLRP12P59046 1061 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 ARMC9Q7Z3E5 817 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TMEM87AQ8NBN3 555 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 SLC44A5Q8NCS7 719 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 CHAMP1Q96JM3 812 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D7Q9P0N9 293 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 PCDHA7Q9UN72 937 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 MRVI1Q9Y6F6 885 aa8.3□□□□□ -1.08
SYNE1-213ENST00000448038 HARSP12081 509 aaKnown RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 PAK1Q13153 545 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 PLA2G4DQ86XP0 818 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SLFN12Q8IYM2 578 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 CSGALNACT2Q8N6G5 542 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 KDM3AQ9Y4C1 1321 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 PRPF3O43395 683 aaKnown RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 ASNSP08243 561 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 CTR9Q6PD62 1173 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 MYCT1Q8N699 235 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 COA7Q96BR5 231 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 NSUN4Q96CB9 384 aaKnown RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 CLIC6Q96NY7 704 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 RBSNQ9H1K0 784 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SYNRGQ9UMZ2 1314 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 BCL9O00512 1426 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 FAM196BA6NMK8 535 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 NR1I2O75469 434 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 GYS1P13807 737 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 CMA1P23946 247 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 GNG11P61952 73 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 PNOCQ13519 176 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SYDE2Q5VT97 1194 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 CYB5R4Q7L1T6 521 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 NOC4LQ9BVI4 516 aaKnown RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SLC5A4Q9NY91 659 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 RNF181Q9P0P0 153 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 COL23A1Q86Y22 540 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-213ENST00000448038 TMEM63CQ9P1W3 806 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 GINS2Q9Y248 185 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 SUGT1Q9Y2Z0 365 aa8.29□□□□□ -1.08
SYNE1-213ENST00000448038 MACROD2A1Z1Q3 448 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 IREB2P48200 963 aaKnown RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 TOB2Q14106 344 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 BEGAINQ9BUH8 593 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 VPS16Q9H269 839 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 MYOM1P52179 1685 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 CETN3O15182 167 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 MMP1P03956 469 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 STRN3Q13033 797 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 GLG1Q92896 1179 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 MLXIPQ9HAP2 919 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 RTEL1Q9NZ71 1219 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 PNPLA7Q6ZV29 1317 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 TRAPPC10P48553 1259 aa8.28□□□□□ -1.08
SYNE1-213ENST00000448038 KIF23Q02241 960 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-213ENST00000448038 TBC1D8BQ0IIM8 1120 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms