RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SEPT2Q15019 361 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 SBK1Q52WX2 424 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 MORN1Q5T089 497 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 C12orf60Q5U649 245 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 DMRTA1Q5VZB9 504 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 DPP9Q86TI2 863 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 NACAP1Q9BZK3 213 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 TANGO6Q9C0B7 1094 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 MKNK2Q9HBH9 465 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 PCDHGA4Q9Y5G9 962 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 USP17L12C9JPN9 530 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 USP17L21D6R901 530 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 WDR46O15213 610 aaKnown RBP9.31□□□□□ -0.92
CD44-211ENST00000442151 CDK8P49336 464 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 JAG1P78504 1218 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 ICA1Q05084 483 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 Q3C1V9 767 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 MAP3K21Q5TCX8 1036 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 C16orf86Q6ZW13 317 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 TICAM2Q86XR7 235 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 ZNF444Q8N0Y2 327 aaPredicted RBP9.31□□□□□ -0.92
CD44-211ENST00000442151 ABRAQ8N0Z2 381 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 LCORLQ8N3X6 602 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 SDR42E1Q8WUS8 393 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 USP6NLQ92738 828 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 PAWRQ96IZ0 340 aaKnown RBP9.31□□□□□ -0.92
CD44-211ENST00000442151 C11orf49Q9H6J7 331 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 VCPKMTQ9H867 229 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 OGDHLQ9ULD0 1010 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 TMX2Q9Y320 296 aa9.31□□□□□ -0.92
CD44-211ENST00000442151 CTDP1Q9Y5B0 961 aaPredicted RBP9.31□□□□□ -0.92
CD44-211ENST00000442151 HOXC6P09630 235 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 KBTBD3Q8NAB2 608 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 ARRDC4Q8NCT1 418 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 ACER1Q8TDN7 264 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 APPBP2Q92624 585 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 TXNRD2Q9NNW7 524 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 TTC41PQ6P2S7 1318 aa9.3□□□□□ -0.92
CD44-211ENST00000442151 RNF113AO15541 343 aaKnown RBP9.29□□□□□ -0.92
CD44-211ENST00000442151 APPP05067 770 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 TRAF7Q6Q0C0 670 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 TRIB2Q92519 343 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 SPATC1LQ9H0A9 340 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 NRBP1Q9UHY1 535 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 SYNPO2Q9UMS6 1093 aa9.29□□□□□ -0.92
CD44-211ENST00000442151 SPDYE16A6NNV3 312 aaPredicted RBP9.28□□□□□ -0.92
CD44-211ENST00000442151 FLOT1O75955 427 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 FDX1P10109 184 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 CACNB2Q08289 660 aaPredicted RBP9.28□□□□□ -0.92
CD44-211ENST00000442151 OLFML2BQ68BL8 750 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 STRBPQ96SI9 672 aaKnown RBP9.28□□□□□ -0.92
CD44-211ENST00000442151 PORCNQ9H237 461 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 CDK5RAP2Q96SN8 1893 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 ZSWIM8A7E2V4 1837 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 PATL2C9JE40 543 aaKnown RBP9.28□□□□□ -0.92
CD44-211ENST00000442151 FCER1AP12319 257 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 CNGA1P29973 690 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 GUCY1A2P33402 732 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 BMP8BP34820 402 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 PDE4BQ07343 736 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 GRB14Q14449 540 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 PLS1Q14651 629 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 CTR9Q6PD62 1173 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 DIS3Q9Y2L1 958 aaKnown RBP9.28□□□□□ -0.92
CD44-211ENST00000442151 CENPFP49454 3210 aa9.28□□□□□ -0.92
CD44-211ENST00000442151 MYO5AQ9Y4I1 1855 aaKnown RBP9.27□□□□□ -0.92
CD44-211ENST00000442151 MINDY4BA8MYZ0 360 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 ZBED4O75132 1171 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 CNMDO75829 334 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 AKR1B1P15121 316 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 TDO2P48775 406 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 NCAPG2Q86XI2 1143 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 DYNLL2Q96FJ2 89 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 MOV10L1Q9BXT6 1211 aaKnown RBP9.27□□□□□ -0.93
CD44-211ENST00000442151 BTBD7Q9P203 1132 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 NYAP2Q9P242 653 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 PRKAG2Q9UGJ0 569 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 DDX20Q9UHI6 824 aaKnown RBP9.27□□□□□ -0.93
CD44-211ENST00000442151 MKI67P46013 3256 aaKnown RBP9.27□□□□□ -0.93
CD44-211ENST00000442151 SIPA1L1O43166 1804 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 BRCA2P51587 3418 aa9.27□□□□□ -0.93
CD44-211ENST00000442151 A0A1W2PRG0 241 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 PRKAB2O43741 272 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 SMARCA5O60264 1052 aaPredicted RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 CYP2D6P10635 497 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 EEF2P13639 858 aaKnown RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 SHROOM1Q2M3G4 852 aaPredicted RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 PUS7LQ9H0K6 701 aaKnown RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 NAV1Q8NEY1 1877 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 KBTBD13C9JR72 458 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 RAD21O60216 631 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 ERCC3P19447 782 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 STAT3P40763 770 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 PSEN2P49810 448 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 FXR1P51114 621 aaKnown RBP eCLIP9.26□□□□□ -0.93
CD44-211ENST00000442151 KCTD2Q14681 263 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 RIOX2Q8IUF8 465 aa9.26□□□□□ -0.93
CD44-211ENST00000442151 MSL3Q8N5Y2 521 aaKnown RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 PRPF38AQ8NAV1 312 aaKnown RBP9.26□□□□□ -0.93
CD44-211ENST00000442151 MMP19Q99542 508 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms