RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 VCX3AQ9NNX9 186 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 MTUS1Q9ULD2 1270 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 COLQQ9Y215 455 aaPredicted RBP7.24□□□□□ -1.25
MCF2-205ENST00000437564 EFR3BQ9Y2G0 817 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 ASB3Q9Y575 518 aa7.24□□□□□ -1.25
MCF2-205ENST00000437564 UACAQ9BZF9 1416 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.23□□□□□ -1.25
MCF2-205ENST00000437564 PHLPP2Q6ZVD8 1323 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 hCG_2014768A0A024R1R8 64 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 A0A0B4J203 849 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 SNX2O60749 519 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 CD2BP2O95400 341 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 CD9P21926 228 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 CTCFP49711 727 aaPredicted RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 GUCY2FP51841 1108 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 BASP1P80723 227 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 PDE1BQ01064 536 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 DR1Q01658 176 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 LONRF2Q1L5Z9 754 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 MEX3CQ5U5Q3 659 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 PCNX4Q63HM2 1172 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 FIP1L1Q6UN15 594 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 SRGAP1Q7Z6B7 1085 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 GRAMD2AQ8IUY3 354 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 NSUN7Q8NE18 718 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 LILRB1Q8NHL6 650 aaPredicted RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 ZNF75CPQ92670 426 aaPredicted RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 UPF1Q92900 1129 aaKnown RBP eCLIP7.23□□□□□ -1.25
MCF2-205ENST00000437564 C8orf48Q96LL4 319 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 TRAPPC9Q96Q05 1148 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 PUS3Q9BZE2 481 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 UBE2OQ9C0C9 1292 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 GOLPH3LQ9H4A5 285 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 BICC1Q9H694 974 aaKnown RBP7.23□□□□□ -1.25
MCF2-205ENST00000437564 TPCN1Q9ULQ1 816 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 ERBINQ96RT1 1412 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 SBNO2Q9Y2G9 1366 aa7.23□□□□□ -1.25
MCF2-205ENST00000437564 SH3TC1Q8TE82 1336 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 TRIM43BA6NCK2 446 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 H0YC42 278 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 TEX28O15482 410 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 HOXA2O43364 376 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SEC31AO94979 1220 aaKnown RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 RRM1P23921 792 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PSMA3P25788 255 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 CCT5P48643 541 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 CD97P48960 835 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 MCM2P49736 904 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 TPD52P55327 224 aaPredicted RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 PDE3AQ14432 1141 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SGSM1Q2NKQ1 1148 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SLC44A4Q53GD3 710 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 ZNF554Q86TJ5 538 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 LILRB2Q8N423 598 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 IFT81Q8WYA0 676 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 C8orf37Q96NL8 207 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 TCF12Q99081 682 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 UQCC2Q9BRT2 126 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 NAT10Q9H0A0 1025 aaKnown RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 SEMA4AQ9H3S1 761 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 EPB41L4AQ9HCS5 686 aaPredicted RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 SLC40A1Q9NP59 571 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PCMTD2Q9NV79 361 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 ANO10Q9NW15 660 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SFMBT1Q9UHJ3 866 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 TTC7AQ9ULT0 858 aaPredicted RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 C15orf41Q9Y2V0 281 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 H0Y3Z8 333 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 M0QX08 132 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 BIN1O00499 593 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PRC1O43663 620 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 FOXD2O60548 495 aaPredicted RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 MX1P20591 662 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 USP5P45974 858 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 GSTM4Q03013 218 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 C10orf76Q5T2E6 689 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PRPF40BQ6NWY9 871 aaKnown RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 CYB5D1Q6P9G0 228 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 CEP128Q6ZU80 1094 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 NT5DC4Q86YG4 428 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 CCAR2Q8N163 923 aaKnown RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 DIS3LQ8TF46 1054 aaKnown RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 NSMCE1Q8WV22 266 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 RUNDC1Q96C34 613 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 ASIC4Q96FT7 647 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PHOX2BQ99453 314 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 VIPAS39Q9H9C1 493 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 PARVBQ9HBI1 364 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 AASDHPPTQ9NRN7 309 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SLC5A4Q9NY91 659 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 SUCLA2Q9P2R7 463 aaPredicted RBP7.22□□□□□ -1.25
MCF2-205ENST00000437564 SLC4A7Q9Y6M7 1214 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 ABCA10Q8WWZ4 1543 aa7.22□□□□□ -1.25
MCF2-205ENST00000437564 ANKRD30BQ9BXX2 1392 aa7.21□□□□□ -1.25
MCF2-205ENST00000437564 SHROOM2Q13796 1616 aa7.21□□□□□ -1.25
MCF2-205ENST00000437564 GAKO14976 1311 aa7.21□□□□□ -1.25
MCF2-205ENST00000437564 STAMBPO95630 424 aa7.21□□□□□ -1.26
MCF2-205ENST00000437564 RBP3P10745 1247 aa7.21□□□□□ -1.26
MCF2-205ENST00000437564 BTF3P20290 206 aaKnown RBP7.21□□□□□ -1.26
MCF2-205ENST00000437564 ATP5DP30049 168 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms