RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 DDX19AQ9NUU7 478 aaKnown RBP24.29■■□□□ 1.48
PTPRF-207ENST00000436724 PCDHB6Q9Y5E3 794 aa24.29■■□□□ 1.48
PTPRF-207ENST00000436724 LETM1O95202 739 aaPredicted RBP24.28■■□□□ 1.48
PTPRF-207ENST00000436724 SPDYE2Q495Y8 402 aa24.28■■□□□ 1.48
PTPRF-207ENST00000436724 VAT1LQ9HCJ6 419 aa24.28■■□□□ 1.48
PTPRF-207ENST00000436724 NBPF9Q3BBW0 867 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 RILPL1Q5EBL4 403 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 WWC2Q6AWC2 1192 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 HOMER1Q86YM7 354 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 CDAN1Q8IWY9 1227 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 CKAP2LQ8IYA6 745 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 TNMDQ9H2S6 317 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 CNTNAP1P78357 1384 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 MYH4Q9Y623 1939 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 JAG1P78504 1218 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 CCDC73Q6ZRK6 1079 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 METTL16Q86W50 562 aaKnown RBP24.27■■□□□ 1.48
PTPRF-207ENST00000436724 ENGASEQ8NFI3 743 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 MRPS27Q92552 414 aaKnown RBP24.27■■□□□ 1.48
PTPRF-207ENST00000436724 ANP32BQ92688 251 aaKnown RBP24.27■■□□□ 1.48
PTPRF-207ENST00000436724 TNFRSF25Q93038 417 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 LZTS2Q9BRK4 669 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 SPZ1Q9BXG8 430 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 CLSTN2Q9H4D0 955 aa24.27■■□□□ 1.48
PTPRF-207ENST00000436724 SCAF8Q9UPN6 1271 aaKnown RBP24.27■■□□□ 1.48
PTPRF-207ENST00000436724 RRP1BQ14684 758 aaKnown RBP24.26■■□□□ 1.47
PTPRF-207ENST00000436724 SEPT2Q15019 361 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 HEATR3Q7Z4Q2 680 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 BRMS1Q9HCU9 246 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 A0A1W2PQ27 194 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 A0A1W2PQ64 194 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 A0A1W2PQD8 194 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 WNT10BO00744 389 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 EGFRP00533 1210 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 NDUFA8P51970 172 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 GPCPD1Q9NPB8 672 aa24.26■■□□□ 1.47
PTPRF-207ENST00000436724 WNT7AO00755 349 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 SNHG28P0DPA3 235 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 EEF2P13639 858 aaKnown RBP24.25■■□□□ 1.47
PTPRF-207ENST00000436724 FAM160A1Q05DH4 1040 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 MAP3K11Q16584 847 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 CLIC6Q96NY7 704 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 FUCA2Q9BTY2 467 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 TMEM39BQ9GZU3 492 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 MTMR14Q8NCE2 650 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 FAM151AQ8WW52 585 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 PIGSQ96S52 555 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 MYOZ2Q9NPC6 264 aa24.25■■□□□ 1.47
PTPRF-207ENST00000436724 PPP6R2O75170 966 aa24.24■■□□□ 1.47
PTPRF-207ENST00000436724 TNIP1Q15025 636 aa24.24■■□□□ 1.47
PTPRF-207ENST00000436724 RBM26Q5T8P6 1007 aaKnown RBP24.24■■□□□ 1.47
PTPRF-207ENST00000436724 SIAH1Q8IUQ4 282 aa24.24■■□□□ 1.47
PTPRF-207ENST00000436724 MRVI1Q9Y6F6 885 aa24.24■■□□□ 1.47
PTPRF-207ENST00000436724 COL2A1P02458 1487 aaPredicted RBP24.24■■□□□ 1.47
PTPRF-207ENST00000436724 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.23■■□□□ 1.47
PTPRF-207ENST00000436724 RAD21O60216 631 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 ABCB5Q2M3G0 1257 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 FMR1NBQ8N0W7 255 aaPredicted RBP24.23■■□□□ 1.47
PTPRF-207ENST00000436724 ZBED3Q96IU2 234 aaPredicted RBP24.23■■□□□ 1.47
PTPRF-207ENST00000436724 EIF4ENIF1Q9NRA8 985 aaKnown RBP24.23■■□□□ 1.47
PTPRF-207ENST00000436724 BARHL2Q9NY43 387 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 STXBP3O00186 592 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 TTBK2Q6IQ55 1244 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 PIK3AP1Q6ZUJ8 805 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 RASGRP4Q8TDF6 673 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 KANSL2Q9H9L4 492 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.23■■□□□ 1.473e-9■■■■■ 40.4
PTPRF-207ENST00000436724 SH3GLB2Q9NR46 395 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 LTBP3Q9NS15 1303 aa24.23■■□□□ 1.47
PTPRF-207ENST00000436724 GH2P01242 217 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 ZNF543Q08ER8 600 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 ASPRV1Q53RT3 343 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 SHC4Q6S5L8 630 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 KCTD1Q719H9 257 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 JMYQ8N9B5 988 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 RRP36Q96EU6 259 aaKnown RBP24.22■■□□□ 1.47
PTPRF-207ENST00000436724 GJA3Q9Y6H8 435 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 ICA1Q05084 483 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 GRIN1Q05586 938 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 TMEM179Q6ZVK1 233 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 BLIDQ8IZY5 108 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 RIOX1Q9H6W3 641 aa24.22■■□□□ 1.47
PTPRF-207ENST00000436724 KINO60870 393 aaKnown RBP24.21■■□□□ 1.47
PTPRF-207ENST00000436724 CMA1P23946 247 aa24.21■■□□□ 1.47
PTPRF-207ENST00000436724 RBM43Q6ZSC3 357 aaKnown RBP24.21■■□□□ 1.47
PTPRF-207ENST00000436724 PDLIM2Q96JY6 352 aa24.21■■□□□ 1.47
PTPRF-207ENST00000436724 PCDHA4Q9UN74 947 aa24.21■■□□□ 1.47
PTPRF-207ENST00000436724 MYO1BO43795 1136 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 PFKFB1P16118 471 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 CALML3P27482 149 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 SLC16A2P36021 539 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 CCDC96Q2M329 555 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 NYAP2Q9P242 653 aa24.2■■□□□ 1.47
PTPRF-207ENST00000436724 ARFGEF1Q9Y6D6 1849 aa24.2■■□□□ 1.46
PTPRF-207ENST00000436724 SMARCA1P28370 1054 aa24.2■■□□□ 1.46
PTPRF-207ENST00000436724 GMPSP49915 693 aaPredicted RBP24.2■■□□□ 1.46
PTPRF-207ENST00000436724 SPECC1Q5M775 1068 aa24.2■■□□□ 1.46
PTPRF-207ENST00000436724 MIGA2Q7L4E1 593 aa24.2■■□□□ 1.46
PTPRF-207ENST00000436724 SEC63Q9UGP8 760 aaKnown RBP24.2■■□□□ 1.46
PTPRF-207ENST00000436724 HERC5Q9UII4 1024 aaKnown RBP24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms