RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 AATFQ9NY61 560 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-205ENST00000424265 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP54-205ENST00000424265 PRC1O43663 620 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 RPSAP08865 295 aaKnown RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 ARHGAP25P42331 645 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 SNCBQ16143 134 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 USP40Q9NVE5 1235 aa10.99□□□□□ -0.65
USP54-205ENST00000424265 TLR7Q9NYK1 1049 aaKnown RBP10.99□□□□□ -0.65
USP54-205ENST00000424265 DOT1LQ8TEK3 1739 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 MARF1Q9Y4F3 1742 aaKnown RBP10.98□□□□□ -0.65
USP54-205ENST00000424265 B4GALNT4Q76KP1 1039 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 TBC1D16Q8TBP0 767 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 FAM227BQ96M60 508 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 MED23Q9ULK4 1368 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 SLC27A2O14975 620 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 UBE2HP62256 183 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 DOK7Q18PE1 504 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 ILDR1Q86SU0 546 aaPredicted RBP10.98□□□□□ -0.65
USP54-205ENST00000424265 NUP62CLQ9H1M0 184 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 OATP04181 439 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 SRGNP10124 158 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 SLC8A1P32418 973 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 GPR161Q8N6U8 529 aaKnown RBP10.98□□□□□ -0.65
USP54-205ENST00000424265 TNMDQ9H2S6 317 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 CEP131Q9UPN4 1083 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 GSDMDP57764 484 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 ZNF827Q17R98 1081 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 BICD1Q96G01 975 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 PDE11AQ9HCR9 933 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 ZNHIT6Q9NWK9 470 aaKnown RBP10.98□□□□□ -0.65
USP54-205ENST00000424265 PNPLA7Q6ZV29 1317 aa10.98□□□□□ -0.65
USP54-205ENST00000424265 BTDP43251 543 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 MAGEA8P43361 318 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 GOLGA1Q92805 767 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 CCDC17Q96LX7 622 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 CFAP45Q9UL16 551 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 PKP1Q13835 747 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 FAXDC2Q96IV6 333 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 EFCAB8A8MWE9 144 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 IARSP41252 1262 aaKnown RBP10.97□□□□□ -0.65
USP54-205ENST00000424265 CCT5P48643 541 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 STK3Q13188 491 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 EXOC8Q8IYI6 725 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 FAM177A1Q8N128 213 aaPredicted RBP10.97□□□□□ -0.65
USP54-205ENST00000424265 CCDC148Q8NFR7 591 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 PARD3BQ8TEW8 1205 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 INTS4Q96HW7 963 aaKnown RBP10.97□□□□□ -0.65
USP54-205ENST00000424265 LZTS2Q9BRK4 669 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 ARHGEF10LQ9HCE6 1279 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 MCM8Q9UJA3 840 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 PNMA2Q9UL42 364 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 LAMB4A4D0S4 1761 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 MCAMP43121 646 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 AKNAD1Q5T1N1 836 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 STRIP1Q5VSL9 837 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 FAM84BQ96KN1 310 aaPredicted RBP10.97□□□□□ -0.65
USP54-205ENST00000424265 TMEM165Q9HC07 324 aa10.97□□□□□ -0.65
USP54-205ENST00000424265 ECE2O60344 883 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CAVIN2O95810 425 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 SSBP05455 408 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP54-205ENST00000424265 RPS6KB1P23443 525 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 ZNF75DP51815 510 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 FBXO33Q7Z6M2 555 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 IFNL3Q8IZI9 196 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 SPDYE1Q8NFV5 336 aaPredicted RBP10.96□□□□□ -0.65
USP54-205ENST00000424265 C17orf50Q8WW18 174 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 KAZALD1Q96I82 304 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 MTMR7Q9Y216 660 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 FAN1Q9Y2M0 1017 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 FAM169AQ9Y6X4 670 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CD2BP2O95400 341 aaKnown RBP10.96□□□□□ -0.65
USP54-205ENST00000424265 RTN1Q16799 776 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CCDC73Q6ZRK6 1079 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 SDCCAG8Q86SQ7 713 aaPredicted RBP10.96□□□□□ -0.65
USP54-205ENST00000424265 ATL2Q8NHH9 583 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 B4GALNT2Q8NHY0 566 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CUL5Q93034 780 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CARD6Q9BX69 1037 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 CLEC11AQ9Y240 323 aa10.96□□□□□ -0.65
USP54-205ENST00000424265 KLF18A0A0U1RQI7 1052 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 BUB1BO60566 1050 aaPredicted RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 RPS12P25398 132 aaKnown RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 TXLNAP40222 546 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 PPARAQ07869 468 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 TCP11Q8WWU5 503 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 MAP4K1Q92918 833 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 YIPF3Q9GZM5 350 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 HSPD1P10809 573 aaKnown RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 KRT85P78386 507 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 CCDC92Q53HC0 331 aaPredicted RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 CAPRIN2Q6IMN6 1127 aaKnown RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 SLC30A9Q6PML9 568 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 C15orf52Q6ZUT6 534 aaKnown RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 C3orf20Q8ND61 904 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 FAM71BQ8TC56 605 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 ZNF483Q8TF39 744 aaPredicted RBP10.96□□□□□ -0.66
USP54-205ENST00000424265 BORCS6Q96GS4 357 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 CD248Q9HCU0 757 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 ZNRF3Q9ULT6 936 aa10.96□□□□□ -0.66
USP54-205ENST00000424265 A0A0D9SFI3 127 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms