RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 POTEEQ6S8J3 1075 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 CATIPQ7Z7H3 387 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 FANCBQ8NB91 859 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 GTF3C6Q969F1 213 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 MTA3Q9BTC8 594 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 FAM155AB1AL88 458 aaPredicted RBP19.28■□□□□ 0.68
SHOX-201ENST00000334060 ZNF157P51786 506 aaPredicted RBP19.28■□□□□ 0.68
SHOX-201ENST00000334060 FKBP1BP68106 108 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 GRM4Q14833 912 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 NTRK3Q16288 839 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 CCDC96Q2M329 555 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 MS4A4AQ96JQ5 239 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 AIFM3Q96NN9 605 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 KIAA1683Q9H0B3 1180 aa19.28■□□□□ 0.68
SHOX-201ENST00000334060 SLKQ9H2G2 1235 aaPredicted RBP19.28■□□□□ 0.68
SHOX-201ENST00000334060 PPATQ06203 517 aa19.27■□□□□ 0.68
SHOX-201ENST00000334060 FUT2Q10981 343 aa19.27■□□□□ 0.68
SHOX-201ENST00000334060 SPRYD7Q5W111 196 aa19.27■□□□□ 0.68
SHOX-201ENST00000334060 ZNF274Q96GC6 653 aaPredicted RBP19.27■□□□□ 0.68
SHOX-201ENST00000334060 GJB4Q9NTQ9 266 aa19.27■□□□□ 0.68
SHOX-201ENST00000334060 SLC1A4P43007 532 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 ZNF543Q08ER8 600 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 ANKRD1Q15327 319 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 RTN1Q16799 776 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 HSCBQ8IWL3 235 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 GMCL1P1Q8NEA9 526 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 SHISA4Q96DD7 197 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 DDX11Q96FC9 970 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 PTPN18Q99952 460 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 PALM3A6NDB9 673 aaPredicted RBP19.26■□□□□ 0.67
SHOX-201ENST00000334060 DDAH1O94760 285 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 FOSBP53539 338 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 PPIL2Q13356 520 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 RGMBQ6NW40 437 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 GADL1Q6ZQY3 521 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 KCNH4Q9UQ05 1017 aa19.26■□□□□ 0.67
SHOX-201ENST00000334060 TMEM232C9JQI7 657 aa19.25■□□□□ 0.67
SHOX-201ENST00000334060 AOC2O75106 756 aa19.25■□□□□ 0.67
SHOX-201ENST00000334060 PAXIP1Q6ZW49 1069 aaPredicted RBP19.25■□□□□ 0.67
SHOX-201ENST00000334060 NSUN7Q8NE18 718 aaKnown RBP19.25■□□□□ 0.67
SHOX-201ENST00000334060 BRI3BPQ8WY22 251 aa19.25■□□□□ 0.67
SHOX-201ENST00000334060 RPAP3Q9H6T3 665 aaPredicted RBP19.25■□□□□ 0.67
SHOX-201ENST00000334060 VAT1LQ9HCJ6 419 aa19.25■□□□□ 0.67
SHOX-201ENST00000334060 A0A0G2JLL6 359 aaPredicted RBP19.24■□□□□ 0.67
SHOX-201ENST00000334060 FDPSP14324 419 aaKnown RBP19.24■□□□□ 0.67
SHOX-201ENST00000334060 APLP1P51693 650 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 GPAT2Q6NUI2 795 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 TMTC3Q6ZXV5 915 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 PRRT2Q7Z6L0 340 aaPredicted RBP19.24■□□□□ 0.67
SHOX-201ENST00000334060 TMTC2Q8N394 836 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 AS3MTQ9HBK9 375 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 NID2Q14112 1375 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 CNTNAP5Q8WYK1 1306 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 KLRF2D3W0D1 207 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 PARP1P09874 1014 aaKnown RBP19.24■□□□□ 0.67
SHOX-201ENST00000334060 CCDC178Q5BJE1 867 aa19.24■□□□□ 0.67
SHOX-201ENST00000334060 RLFQ13129 1914 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 ADAMTS3O15072 1205 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 BMP3P12645 472 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 CUL4AQ13619 759 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 R3HDMLQ9H3Y0 253 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 GINM1Q9NU53 330 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 LOC285556D6RIA3 1793 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 SLC10A3P09131 477 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 SH3D19Q5HYK7 790 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 SYNE3Q6ZMZ3 975 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 FAM43AQ8N2R8 423 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 CTCFLQ8NI51 663 aaPredicted RBP19.23■□□□□ 0.67
SHOX-201ENST00000334060 GMCL1Q96IK5 515 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 TANGO6Q9C0B7 1094 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 GOPCQ9HD26 462 aa19.23■□□□□ 0.67
SHOX-201ENST00000334060 SMCHD1A6NHR9 2005 aa19.22■□□□□ 0.67
SHOX-201ENST00000334060 PTPDC1A2A3K4 754 aa19.22■□□□□ 0.67
SHOX-201ENST00000334060 PPP1R11O60927 126 aaPredicted RBP19.22■□□□□ 0.67
SHOX-201ENST00000334060 NT5C2P49902 561 aa19.22■□□□□ 0.67
SHOX-201ENST00000334060 HOMER1Q86YM7 354 aa19.22■□□□□ 0.67
SHOX-201ENST00000334060 PARP14Q460N5 1801 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 CCL15-CCL14A0A0B4J2E2 113 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 IGF2BP3O00425 579 aaKnown RBP eCLIP19.21■□□□□ 0.67
SHOX-201ENST00000334060 CYP2C8P10632 490 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 CCL15Q16663 113 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 OTUD7BQ6GQQ9 843 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 ADGRF4Q8IZF3 695 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 KIFC2Q96AC6 838 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 PIGSQ96S52 555 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 BTBD19C9JJ37 291 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 DCAF4Q8WV16 495 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 ATG4CQ96DT6 458 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 C12orf42Q96LP6 360 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 SLC26A6Q9BXS9 759 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 JMJD4Q9H9V9 463 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 CREBZFQ9NS37 354 aa19.21■□□□□ 0.67
SHOX-201ENST00000334060 IKQ13123 557 aaPredicted RBP19.2■□□□□ 0.66
SHOX-201ENST00000334060 PKP1Q13835 747 aa19.2■□□□□ 0.66
SHOX-201ENST00000334060 PKN1Q16512 942 aa19.2■□□□□ 0.66
SHOX-201ENST00000334060 GPKOWQ92917 476 aaPredicted RBP eCLIP19.2■□□□□ 0.66
SHOX-201ENST00000334060 ZSCAN31Q96LW9 406 aaPredicted RBP19.2■□□□□ 0.66
SHOX-201ENST00000334060 SH2B1Q9NRF2 756 aaPredicted RBP19.2■□□□□ 0.66
SHOX-201ENST00000334060 PRR12Q9ULL5 1215 aa19.2■□□□□ 0.66
SHOX-201ENST00000334060 V9GY48 417 aaPredicted RBP19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms