RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 GMCL1Q96IK5 515 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 ARHGAP39Q9C0H5 1083 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 KAT14Q9H8E8 782 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 TXNRD2Q9NNW7 524 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 HOXC10Q9NYD6 342 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 RBPJLQ9UBG7 517 aa18.67■□□□□ 0.58
CCDC28A-201ENST00000332797 RLFQ13129 1914 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 HSPA4P34932 840 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 ANTXR2P58335 489 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 CAP1Q01518 475 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 CCDC96Q2M329 555 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 IFIT1BQ5T764 474 aaKnown RBP18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 POTEEQ6S8J3 1075 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 LBX2Q6XYB7 198 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 ATG4CQ96DT6 458 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 MORF4L1Q9UBU8 362 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 MYPNQ86TC9 1320 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 A0A0G2JMZ2 1700 aa18.66■□□□□ 0.58
CCDC28A-201ENST00000332797 ERICH2A1L162 156 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 IFIT3O14879 490 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 PSMC4P43686 418 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 SART3Q15020 963 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 KCTD1Q719H9 257 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 CTU1Q7Z7A3 348 aaKnown RBP18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 PNMA1Q8ND90 353 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 GPRC5AQ8NFJ5 357 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 DCAF4Q8WV16 495 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 ANKS1AQ92625 1134 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 SLF1Q9BQI6 1058 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 PPP1R9AQ9ULJ8 1098 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 RABGAP1Q9Y3P9 1069 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 TMEM232C9JQI7 657 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 PRC1O43663 620 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 CNMDO75829 334 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 FMNL1O95466 1100 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 CTGFP29279 349 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 MCM5P33992 734 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 ERVK-9P63128 1117 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 ERVK-24P63145 666 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 IKQ13123 557 aaPredicted RBP18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 KRT32Q14532 448 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 ARHGEF6Q15052 776 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 SEC23AQ15436 765 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 USP26Q9BXU7 913 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 EFCC1Q9HA90 598 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 BTBD7Q9P203 1132 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 FEM1BQ9UK73 627 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 TRIM17Q9Y577 477 aa18.65■□□□□ 0.58
CCDC28A-201ENST00000332797 EPB41L2O43491 1005 aaKnown RBP18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 FCGRTP55899 365 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 COL9A3Q14050 684 aaPredicted RBP18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 WTAPQ15007 396 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 ADCK5Q3MIX3 580 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 TSGA10IPQ3SY00 556 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 TMEM67Q5HYA8 995 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 OTOP1Q7RTM1 612 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 KCNB2Q92953 911 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 KIFC2Q96AC6 838 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 TRIM47Q96LD4 638 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 NEK1Q96PY6 1258 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 SNX14Q9Y5W7 946 aa18.64■□□□□ 0.57
CCDC28A-201ENST00000332797 FRMPD2Q68DX3 1309 aaPredicted RBP18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 PDHBP11177 359 aa18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 STAT2P52630 851 aa18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 Q3C1V9 767 aa18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 MB21D1Q8N884 522 aa18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 PRPF38AQ8NAV1 312 aaKnown RBP18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 MGAMO43451 1857 aa18.63■□□□□ 0.57
CCDC28A-201ENST00000332797 VWA5AO00534 786 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 PLS1Q14651 629 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 FAM160B2Q86V87 743 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 CCAR1Q8IX12 1150 aaKnown RBP18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 CHURC1Q8WUH1 139 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 SENP2Q9HC62 589 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 GPCPD1Q9NPB8 672 aa18.62■□□□□ 0.57
CCDC28A-201ENST00000332797 COL11A1P12107 1806 aaPredicted RBP18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 TNPO2O14787 897 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 SNHG28P0DPA3 235 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 CCNA1P78396 465 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 ZNF543Q08ER8 600 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 IGDCC4Q8TDY8 1250 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 TMEM87BQ96K49 555 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 JAKMIP1Q96N16 626 aaKnown RBP18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 LRRC2Q9BYS8 371 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 MCOLN1Q9GZU1 580 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 PORCNQ9H237 461 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 GPHNQ9NQX3 736 aaPredicted RBP18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 ADAMTS5Q9UNA0 930 aa18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 CTDP1Q9Y5B0 961 aaPredicted RBP18.61■□□□□ 0.57
CCDC28A-201ENST00000332797 EIF5BO60841 1220 aaKnown RBP18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 TMEM132BQ14DG7 1078 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 C8orf34Q49A92 452 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 TTBK2Q6IQ55 1244 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 MTA3Q9BTC8 594 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 SPATC1LQ9H0A9 340 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 LY9Q9HBG7 655 aa18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 CWC22Q9HCG8 908 aaKnown RBP18.6■□□□□ 0.57
CCDC28A-201ENST00000332797 SH2B2O14492 632 aaPredicted RBP18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 PLA2G6O60733 806 aa18.59■□□□□ 0.57
CCDC28A-201ENST00000332797 ZBED4O75132 1171 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms