RNA–Protein interactions for RNA: ENST00000330949.2

SOX1-201, Transcript of SRY-box 1, humanhuman

APPRIS P1 BASIC

Gene SOX1, Length 2,842 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1-201ENST00000330949 PHRF1Q9P1Y6 1649 aaKnown RBP27.23■■□□□ 1.95
SOX1-201ENST00000330949 ITIH3Q06033 890 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 NTRK3Q16288 839 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 MICU3Q86XE3 530 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 CCDC50Q8IVM0 306 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 CCDC13Q8IYE1 715 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 STK36Q9NRP7 1315 aa27.23■■□□□ 1.95
SOX1-201ENST00000330949 HERVK_113P62684 666 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 KDM7AQ6ZMT4 941 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 FMNL3Q8IVF7 1028 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 FNBP4Q8N3X1 1017 aaPredicted RBP27.22■■□□□ 1.95
SOX1-201ENST00000330949 JADE2Q9NQC1 790 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 BTBD18B2RXH4 712 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 SH2B2O14492 632 aaPredicted RBP27.22■■□□□ 1.95
SOX1-201ENST00000330949 AFMP43652 599 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 ZBTB43O43298 467 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 FAXDC2Q96IV6 333 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 PUS3Q9BZE2 481 aaKnown RBP27.22■■□□□ 1.95
SOX1-201ENST00000330949 CTNND2Q9UQB3 1225 aa27.22■■□□□ 1.95
SOX1-201ENST00000330949 KIF3CO14782 793 aa27.21■■□□□ 1.95
SOX1-201ENST00000330949 ZNF185O15231 689 aa27.21■■□□□ 1.95
SOX1-201ENST00000330949 MMP1P03956 469 aa27.21■■□□□ 1.95
SOX1-201ENST00000330949 IDEP14735 1019 aa27.21■■□□□ 1.95
SOX1-201ENST00000330949 CSRNP2Q9H175 543 aa27.21■■□□□ 1.95
SOX1-201ENST00000330949 SIPA1L3O60292 1781 aaPredicted RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 RANBP6O60518 1105 aaKnown RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 SSRP1Q08945 709 aaKnown RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 TTF1Q15361 905 aaPredicted RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 DIS3L2Q8IYB7 885 aaKnown RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 ZNF473Q8WTR7 871 aaKnown RBP27.21■■□□□ 1.95
SOX1-201ENST00000330949 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.21■■□□□ 1.95
SOX1-201ENST00000330949 GOLGA6L7A0A1B0GV03 622 aa27.2■■□□□ 1.95
SOX1-201ENST00000330949 NBPF26B4DH59 902 aa27.2■■□□□ 1.95
SOX1-201ENST00000330949 NNTQ13423 1086 aa27.2■■□□□ 1.95
SOX1-201ENST00000330949 NBPF10Q6P3W6 841 aaKnown RBP27.2■■□□□ 1.95
SOX1-201ENST00000330949 SMYD4Q8IYR2 804 aaPredicted RBP27.2■■□□□ 1.95
SOX1-201ENST00000330949 NBPF15Q8N660 670 aa27.2■■□□□ 1.95
SOX1-201ENST00000330949 CAVIN3Q969G5 261 aa27.2■■□□□ 1.95
SOX1-201ENST00000330949 FOXP1Q9H334 677 aaPredicted RBP27.2■■□□□ 1.95
SOX1-201ENST00000330949 LUC7L2Q9Y383 392 aaKnown RBP27.2■■□□□ 1.95
SOX1-201ENST00000330949 ATP1A2P50993 1020 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 APBA1Q02410 837 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 USP49Q70CQ1 688 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 SH3RF1Q7Z6J0 888 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 PAGE5Q96GU1 130 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 DNAJC7Q99615 494 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 CENPHQ9H3R5 247 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 SLC40A1Q9NP59 571 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 TAB2Q9NYJ8 693 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 KCNG1Q9UIX4 513 aa27.2■■□□□ 1.94
SOX1-201ENST00000330949 IPO7O95373 1038 aaKnown RBP27.19■■□□□ 1.94
SOX1-201ENST00000330949 SNCBQ16143 134 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 SLC26A6Q9BXS9 759 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 STRN4Q9NRL3 753 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 GOLGA8AA7E2F4 631 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 DPYDQ12882 1025 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 EMC10Q5UCC4 262 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 ATG9AQ7Z3C6 839 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 DCAF5Q96JK2 942 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 ACTR5Q9H9F9 607 aaPredicted RBP27.19■■□□□ 1.94
SOX1-201ENST00000330949 PCDHB6Q9Y5E3 794 aa27.19■■□□□ 1.94
SOX1-201ENST00000330949 A0A1B0GUA9 196 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 TCP11X2Q5H9J9 407 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 MAGEC3Q8TD91 643 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 DMGDHQ9UI17 866 aaKnown RBP27.18■■□□□ 1.94
SOX1-201ENST00000330949 BCL9LQ86UU0 1499 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 PPP1R37O75864 691 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 EZRP15311 586 aaKnown RBP27.18■■□□□ 1.94
SOX1-201ENST00000330949 ATF3P18847 181 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 IL15P40933 162 aaPredicted RBP27.18■■□□□ 1.94
SOX1-201ENST00000330949 UBXN1Q04323 297 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 ZNF572Q7Z3I7 529 aaPredicted RBP27.18■■□□□ 1.94
SOX1-201ENST00000330949 TSEN2Q8NCE0 465 aaKnown RBP27.18■■□□□ 1.94
SOX1-201ENST00000330949 LRRC1Q9BTT6 524 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 AATFQ9NY61 560 aaKnown RBP eCLIP27.18■■□□□ 1.94
SOX1-201ENST00000330949 TBC1D2BQ9UPU7 963 aa27.18■■□□□ 1.94
SOX1-201ENST00000330949 TTC26A0AVF1 554 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 SRRM3A6NNA2 597 aaPredicted RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 NEBLO76041 1014 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 CYLC1P35663 651 aaPredicted RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 TRPM3Q9HCF6 1732 aaPredicted RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 AFDNP55196 1824 aaKnown RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 KCNJ18B7U540 433 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 KCNJ12Q14500 433 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 PTGISQ16647 500 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 TMEM87BQ96K49 555 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 RNPC3Q96LT9 517 aaKnown RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 BCCIPQ9P287 314 aaKnown RBP eCLIP27.17■■□□□ 1.94
SOX1-201ENST00000330949 RWDD2AQ9UIY3 292 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 IQSEC3Q9UPP2 1182 aaPredicted RBP27.17■■□□□ 1.94
SOX1-201ENST00000330949 FOXO4P98177 505 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 NFXL1Q6ZNB6 911 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 HDAC7Q8WUI4 952 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 APPBP2Q92624 585 aa27.17■■□□□ 1.94
SOX1-201ENST00000330949 FMNL1O95466 1100 aaPredicted RBP27.16■■□□□ 1.94
SOX1-201ENST00000330949 TNFRSF8P28908 595 aa27.16■■□□□ 1.94
SOX1-201ENST00000330949 CEP57Q86XR8 500 aa27.16■■□□□ 1.94
SOX1-201ENST00000330949 SH2D3CQ8N5H7 860 aa27.16■■□□□ 1.94
SOX1-201ENST00000330949 PLBD2Q8NHP8 589 aa27.16■■□□□ 1.94
SOX1-201ENST00000330949 ZIM3Q96PE6 472 aa27.16■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms