RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 EPHB4P54760 987 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 BASP1P80723 227 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 DMPKQ09013 629 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 SMARCA2P51531 1590 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 EEF1GP26641 437 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 IGBP1P78318 339 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 U2AF1L4Q8WU68 220 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 ABCB6Q9NP58 842 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 WDR91A4D1P6 747 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 SLC35F6Q8N357 371 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 PDE6AP16499 860 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 EHHADHQ08426 723 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 LAMB3Q13751 1172 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 UTP6Q9NYH9 597 aaKnown RBP12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 ANKIB1Q9P2G1 1089 aa12.89□□□□□ -0.35
SHROOM3-201ENST00000296043 GSTA1P08263 222 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 GSTA2P09210 222 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 PKP1Q13835 747 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 ATF2P15336 505 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 NAIF1Q69YI7 327 aaPredicted RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 DTHD1Q6ZMT9 781 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 SRLQ86TD4 932 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 RRP36Q96EU6 259 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 CAPN11Q9UMQ6 739 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 PTPN22Q9Y2R2 807 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 CUTAO60888 179 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 KLHL30Q0D2K2 578 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 HP1BP3Q5SSJ5 553 aaPredicted RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 POMGNT1Q8WZA1 660 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 NUDCD1Q96RS6 583 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 MEIS3Q99687 375 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 LMNAP02545 664 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 MORC3Q14149 939 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 SPATA17Q96L03 361 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 DAB1O75553 588 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 PDE4DQ08499 809 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 BLZF1Q9H2G9 400 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 WARS2Q9UGM6 360 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 CHMLP26374 656 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 KRT79Q5XKE5 535 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 OTUD7BQ6GQQ9 843 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 FAM47EQ6ZV65 393 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 SIRT1Q96EB6 747 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 EPB41L5Q9HCM4 733 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 NOP14P78316 857 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 MRPS25P82663 173 aaKnown RBP12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 TRAF3IP3Q9Y228 551 aa12.88□□□□□ -0.35
SHROOM3-201ENST00000296043 TMEM232C9JQI7 657 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 CFLARO15519 480 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 CDC25BP30305 580 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 ALS2CLQ60I27 953 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 CCDC51Q96ER9 411 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 TRIM56Q9BRZ2 755 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 POC1B-GALNT4F8VUJ3 575 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 SAT1P21673 171 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 BIRC3Q13489 604 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 RAPGEF5Q92565 580 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 RIC8AQ9NPQ8 531 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 CXCR5P32302 372 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 MRPL28Q13084 256 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 RNF169Q8NCN4 708 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 E9PMD0 336 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 RNASELQ05823 741 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 OGFOD1Q8N543 542 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 SLC7A5Q01650 507 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 KMT5BQ4FZB7 885 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 ZCCHC17Q9NP64 241 aaKnown RBP12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 ARHGAP5Q13017 1502 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 RSAD2Q8WXG1 361 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 TRAF1Q13077 416 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 USP28Q96RU2 1077 aa12.87□□□□□ -0.35
SHROOM3-201ENST00000296043 HEXIM1O94992 359 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 SLFN14P0C7P3 912 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 MLKLQ8NB16 471 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 STX8Q9UNK0 236 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 STX10O60499 249 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 C1orf146Q5VVC0 180 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 OTUD7AQ8TE49 926 aaPredicted RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 CACTINQ8WUQ7 758 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 STXBP3O00186 592 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 SF3B3Q15393 1217 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 RGS9BPQ6ZS82 235 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 MIS12Q9H081 205 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 GSTA4O15217 222 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 ABCB4P21439 1286 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 RPL13P26373 211 aaKnown RBP12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 SV2BQ7L1I2 683 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 GGCXP38435 758 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 ART3Q13508 389 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 EFHD1Q9BUP0 239 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 KDM2BQ8NHM5 1336 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 RPS6KB1P23443 525 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 WDR44Q5JSH3 913 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 IQCDQ96DY2 449 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 TRAIPQ9BWF2 469 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 LMNB1P20700 586 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 STRN3Q13033 797 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 ESR2Q92731 530 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 NLRC4Q9NPP4 1024 aa12.86□□□□□ -0.35
SHROOM3-201ENST00000296043 CALML3P27482 149 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms