RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.32□□□□□ -0.28
SF3B6-201ENST00000233468 TMX2Q9Y320 296 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 MYH7P12883 1935 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 FOCADQ5VW36 1801 aa13.32□□□□□ -0.28
SF3B6-201ENST00000233468 NAV1Q8NEY1 1877 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L15C9J2P7 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L13C9JLJ4 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L11C9JVI0 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L18D6R9N7 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L22D6RA61 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L17D6RBQ6 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L19D6RCP7 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L20D6RJB6 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 SMIM22K7EJ46 135 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 FMNL1O95466 1100 aaPredicted RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 EEF2P13639 858 aaKnown RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 GCLCP48506 637 aaPredicted RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 USP17L24Q0WX57 530 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 SHROOM1Q2M3G4 852 aaPredicted RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 RRP12Q5JTH9 1297 aaKnown RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 RNF20Q5VTR2 975 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 ACER1Q8TDN7 264 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 MAP4K1Q92918 833 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 ZFP91Q96JP5 570 aaPredicted RBP13.31□□□□□ -0.28
SF3B6-201ENST00000233468 ANO2Q9NQ90 1003 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 EMILIN3Q9NT22 766 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 MTMR4Q9NYA4 1195 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 GABRQQ9UN88 632 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 PLIN4Q96Q06 1357 aa13.31□□□□□ -0.28
SF3B6-201ENST00000233468 DDX60LQ5H9U9 1706 aaKnown RBP13.3□□□□□ -0.28
SF3B6-201ENST00000233468 ATAD5Q96QE3 1844 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 POTEB2H3BUK9 544 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 GNRH1P01148 92 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 BCRP11274 1271 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 GRK4P32298 578 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 PRKCZQ05513 592 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 ZYXQ15942 572 aaKnown RBP13.3□□□□□ -0.28
SF3B6-201ENST00000233468 FAM47AQ5JRC9 791 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 TREML2Q5T2D2 321 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 IQCA1Q86XH1 822 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 RAET1EQ8TD07 263 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 VCPKMTQ9H867 229 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 TCP11L1Q9NUJ3 509 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 HOXC10Q9NYD6 342 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 CLIP2Q9UDT6 1046 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 MYPNQ86TC9 1320 aa13.3□□□□□ -0.28
SF3B6-201ENST00000233468 MYH1P12882 1939 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 IGKV6D-41A0A0C4DH26 115 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 WDR46O15213 610 aaKnown RBP13.29□□□□□ -0.28
SF3B6-201ENST00000233468 RAD21O60216 631 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 REC8O95072 547 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 CCL5P13501 91 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 VCAM1P19320 739 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 PRMT2P55345 433 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 MKL1Q969V6 931 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 CEP95Q96GE4 821 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 TTC14Q96N46 770 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.29□□□□□ -0.28
SF3B6-201ENST00000233468 ASCC2Q9H1I8 757 aaPredicted RBP13.29□□□□□ -0.28
SF3B6-201ENST00000233468 IL25Q9H293 177 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 STX8Q9UNK0 236 aa13.29□□□□□ -0.28
SF3B6-201ENST00000233468 A0A1W2PRG0 241 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 PTH1RQ03431 593 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 CATSPERGQ6ZRH7 1159 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 RALYLQ86SE5 291 aaKnown RBP13.28□□□□□ -0.28
SF3B6-201ENST00000233468 SIAH1Q8IUQ4 282 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 TBC1D10CQ8IV04 446 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 TANGO6Q9C0B7 1094 aa13.28□□□□□ -0.28
SF3B6-201ENST00000233468 RPAP3Q9H6T3 665 aaPredicted RBP13.28□□□□□ -0.28
SF3B6-201ENST00000233468 BIN2Q9UBW5 565 aaPredicted RBP13.28□□□□□ -0.28
SF3B6-201ENST00000233468 RBM8AQ9Y5S9 174 aaKnown RBP13.28□□□□□ -0.28
SF3B6-201ENST00000233468 F5H6K3 240 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 HOXD10P28358 340 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 KLRC3Q07444 240 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 COG2Q14746 738 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 SART3Q15020 963 aaKnown RBP13.27□□□□□ -0.29
SF3B6-201ENST00000233468 FAM110CQ1W6H9 321 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 GMCL1P1Q8NEA9 526 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 NCOA7Q8NI08 942 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 DPF3Q92784 378 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 UBAC1Q9BSL1 405 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 LSG1Q9H089 658 aaKnown RBP13.27□□□□□ -0.29
SF3B6-201ENST00000233468 RNF208Q9H0X6 261 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 UNC93B1Q9H1C4 597 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 SIPA1L1O43166 1804 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 CDK5RAP2Q96SN8 1893 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 ALPK3Q96L96 1907 aa13.27□□□□□ -0.29
SF3B6-201ENST00000233468 ERICH2A1L162 156 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 EPB41L2O43491 1005 aaKnown RBP13.26□□□□□ -0.29
SF3B6-201ENST00000233468 KDM4AO75164 1064 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 CYP21A2P08686 494 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 TOP1P11387 765 aaKnown RBP13.26□□□□□ -0.29
SF3B6-201ENST00000233468 ELNP15502 786 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 ZKSCAN1P17029 563 aaPredicted RBP13.26□□□□□ -0.29
SF3B6-201ENST00000233468 GJA8P48165 433 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 FCGRTP55899 365 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 HERVK_113P62684 666 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 CCNA1P78396 465 aa13.26□□□□□ -0.29
SF3B6-201ENST00000233468 IRX5P78411 483 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms