RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W SAD1P43589 448 aa1.28□□□□□ -2.2
CDC39YCR093W RFX1P48743 811 aa1.28□□□□□ -2.2
CDC39YCR093W NMA2P53204 395 aa1.28□□□□□ -2.2
CDC39YCR093W YLR287CQ05881 355 aa1.28□□□□□ -2.2
CDC39YCR093W DIS3Q08162 1001 aaKnown RBP1.28□□□□□ -2.2
CDC39YCR093W TUB3P09734 445 aaKnown RBP1.28□□□□□ -2.21
CDC39YCR093W BIK1P11709 440 aa1.28□□□□□ -2.21
CDC39YCR093W YCR006CP25350 157 aa1.28□□□□□ -2.21
CDC39YCR093W LRE1P25579 583 aaKnown RBP1.28□□□□□ -2.21
CDC39YCR093W LAC1P28496 418 aa1.28□□□□□ -2.21
CDC39YCR093W PUP2P32379 260 aa1.28□□□□□ -2.21
CDC39YCR093W HCS1P34243 683 aa1.28□□□□□ -2.21
CDC39YCR093W RMA1P36001 430 aaKnown RBP1.28□□□□□ -2.21
CDC39YCR093W MNT3P40549 630 aa1.28□□□□□ -2.21
CDC39YCR093W IRC7P43623 340 aa1.28□□□□□ -2.21
CDC39YCR093W SSN8P47821 323 aa1.28□□□□□ -2.21
CDC39YCR093W MPS2P53159 387 aa1.28□□□□□ -2.21
CDC39YCR093W BRE5P53741 515 aaKnown RBP1.28□□□□□ -2.21
CDC39YCR093W KIN4Q01919 800 aa1.28□□□□□ -2.21
CDC39YCR093W MRI1Q06489 411 aaKnown RBP1.28□□□□□ -2.21
CDC39YCR093W SCM3Q12334 223 aa1.28□□□□□ -2.21
CDC39YCR093W RRI2Q12348 645 aa1.28□□□□□ -2.21
CDC39YCR093W DFR1P07807 211 aaKnown RBP RIP-Chip data1.27□□□□□ -2.21not detected
CDC39YCR093W RPS21AP0C0V8 87 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W RAD14P28519 371 aa1.27□□□□□ -2.21
CDC39YCR093W CRM1P30822 1084 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W UBP11P36026 717 aa1.27□□□□□ -2.21
CDC39YCR093W NOP16P40007 231 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W PUG1P40100 303 aa1.27□□□□□ -2.21
CDC39YCR093W IAH1P41734 238 aa1.27□□□□□ -2.21
CDC39YCR093W OCA1P50946 238 aaPredicted RBP1.27□□□□□ -2.21
CDC39YCR093W SWA2Q06677 668 aa1.27□□□□□ -2.21
CDC39YCR093W AIM6Q07716 390 aa1.27□□□□□ -2.21
CDC39YCR093W RDL1Q12305 139 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W CEX1Q12453 761 aa1.27□□□□□ -2.21
CDC39YCR093W HTZ1Q12692 134 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W RPS7AP26786 190 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W RPN2P32565 945 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W PDR3P33200 976 aa1.27□□□□□ -2.21
CDC39YCR093W RTS1P38903 757 aa1.27□□□□□ -2.21
CDC39YCR093W FTR1P40088 404 aa1.27□□□□□ -2.21
CDC39YCR093W SDS3P40505 327 aa1.27□□□□□ -2.21
CDC39YCR093W NET1P47035 1189 aa1.27□□□□□ -2.21
CDC39YCR093W STB4P50104 949 aa1.27□□□□□ -2.21
CDC39YCR093W NNF2P53253 936 aa1.27□□□□□ -2.21
CDC39YCR093W YNR071CP53757 342 aa1.27□□□□□ -2.21
CDC39YCR093W IDP3P53982 420 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W YVH1Q02256 364 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W USA1Q03714 838 aa1.27□□□□□ -2.21
CDC39YCR093W THI22Q06490 572 aa1.27□□□□□ -2.21
CDC39YCR093W MUM3Q08750 479 aa1.27□□□□□ -2.21
CDC39YCR093W LEU9Q12166 604 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W MSS18P08593 268 aa1.27□□□□□ -2.21
CDC39YCR093W YMR085WP0CF18 432 aa1.27□□□□□ -2.21
CDC39YCR093W CNE1P27825 502 aa1.27□□□□□ -2.21
CDC39YCR093W NIP100P33420 868 aa1.27□□□□□ -2.21
CDC39YCR093W PHM8P40025 321 aa1.27□□□□□ -2.21
CDC39YCR093W QRI7P43122 407 aa1.27□□□□□ -2.21
CDC39YCR093W STR3P53101 465 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W YMR206WQ03695 313 aa1.27□□□□□ -2.21
CDC39YCR093W FIN1Q03898 291 aa1.27□□□□□ -2.21
CDC39YCR093W MMS22Q06164 1454 aa1.27□□□□□ -2.21
CDC39YCR093W CPA2P03965 1118 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W ARG81P05085 880 aa1.27□□□□□ -2.21
CDC39YCR093W TUP1P16649 713 aa1.27□□□□□ -2.21
CDC39YCR093W HXT4P32467 576 aa1.27□□□□□ -2.21
CDC39YCR093W PDB1P32473 366 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W TRS65P32893 560 aa1.27□□□□□ -2.21
CDC39YCR093W YHR131CP38835 850 aa1.27□□□□□ -2.21
CDC39YCR093W PFA5Q03289 374 aa1.27□□□□□ -2.21
CDC39YCR093W RRP45Q05636 305 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W ECM38Q05902 660 aaPredicted RBP1.27□□□□□ -2.21
CDC39YCR093W HRP1Q99383 534 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W MF(ALPHA)1P01149 165 aa1.27□□□□□ -2.21
CDC39YCR093W ERG11P10614 530 aa1.27□□□□□ -2.21
CDC39YCR093W ARG1P22768 420 aa1.27□□□□□ -2.21
CDC39YCR093W YCL049CP25577 312 aa1.27□□□□□ -2.21
CDC39YCR093W CDC5P32562 705 aa1.27□□□□□ -2.21
CDC39YCR093W TFB1P32776 642 aa1.27□□□□□ -2.21
CDC39YCR093W PPS1P38148 807 aa1.27□□□□□ -2.21
CDC39YCR093W RIX1P38883 763 aaPredicted RBP1.27□□□□□ -2.21
CDC39YCR093W LYS9P38999 446 aa1.27□□□□□ -2.21
CDC39YCR093W ARB1P40024 610 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W IME4P41833 600 aa1.27□□□□□ -2.21
CDC39YCR093W GIP3Q03016 1276 aa1.27□□□□□ -2.21
CDC39YCR093W SNU56Q03782 492 aaKnown RBP1.27□□□□□ -2.21
CDC39YCR093W POS5Q06892 414 aa1.27□□□□□ -2.21
CDC39YCR093W REX4Q08237 289 aa1.27□□□□□ -2.21
CDC39YCR093W GPR1Q12361 961 aa1.27□□□□□ -2.21
CDC39YCR093W YNL162W-AQ3E7A8 72 aa1.27□□□□□ -2.21
CDC39YCR093W MLP2P40457 1679 aa1.26□□□□□ -2.21
CDC39YCR093W CAR1P00812 333 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W TUB1P09733 447 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W HOM2P13663 365 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W OLE1P21147 510 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W MCM10P32354 571 aa1.26□□□□□ -2.21
CDC39YCR093W TSA1P34760 196 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W HOT13P36078 116 aa1.26□□□□□ -2.21
CDC39YCR093W FAT1P38225 669 aa1.26□□□□□ -2.21
CDC39YCR093W YBR053CP38235 358 aa1.26□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 69.5 ms