RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	YDR018C	Q12185	396 aa		5	□□□□□ -1.61
CDC28	YBR160W	RRP36	Q12481	300 aa	Predicted RBP	5	□□□□□ -1.61
CDC28	YBR160W	ATP2	P00830	511 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	ADE8	P04161	214 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	NPP1	P25353	742 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	URA7	P28274	579 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	RAD14	P28519	371 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	DGR2	P32330	852 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	MUD1	P32605	298 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	KES1	P35844	434 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	DBP7	P36120	742 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	ETR1	P38071	380 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	FLR1	P38124	548 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	CTP1	P38152	299 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	FES1	P38260	290 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	DIA4	P38705	446 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	TRM5	P38793	499 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	YAP1801	P38856	637 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	DSS1	P39112	969 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	TMA108	P40462	946 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	LAM5	P43560	674 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	FMS1	P50264	508 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	ORM1	P53224	222 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	YGR054W	P53235	642 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	DIP5	P53388	608 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	BIO4	P53630	237 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	NOG2	P53742	486 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	SQS1	P53866	767 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	RPA49	Q01080	415 aa	Predicted RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	SRP1	Q02821	542 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	YDR476C	Q03362	224 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	ROT1	Q03691	256 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	KAP95	Q06142	861 aa	Known RBP	4.99	□□□□□ -1.61
CDC28	YBR160W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
CDC28	YBR160W	YPR202W	Q08993	238 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	SLX4	Q12098	748 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	HRT3	Q12347	344 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	AVL9	Q12500	764 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	ATG11	Q12527	1178 aa		4.99	□□□□□ -1.61
CDC28	YBR160W	GSC2	P40989	1895 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	BI2	P03873	423 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	SUI3	P09064	285 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	IMA3	P0CW40	589 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	IMA4	P0CW41	589 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	CDC24	P11433	854 aa	Predicted RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	ATR1	P13090	542 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	RNR1	P21524	888 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	DAL2	P25335	343 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	RPS7A	P26786	190 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	FUN30	P31380	1131 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	RPC82	P32349	654 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	TFC1	P32367	649 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	RPN2	P32565	945 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	TMT1	P32643	299 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	HBS1	P32769	611 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	RIB7	P33312	244 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	YBP1	P38315	674 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	SAH1	P39954	449 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	IES5	P40060	125 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	FTR1	P40088	404 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	SNL1	P40548	159 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	YRB1	P41920	201 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	ARC1	P46672	376 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	TAF1	P46677	1066 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	POL31	P46957	487 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	MRM2	P53123	320 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	YGR016W	P53209	190 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	KRE28	Q04431	385 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	FMP42	Q04991	504 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	ADE13	Q05911	482 aa	Known RBP	4.98	□□□□□ -1.61
CDC28	YBR160W	THI7	Q05998	598 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	ESC8	Q08119	714 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	SMC5	Q08204	1093 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	IMA2	Q08295	589 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	GIS3	Q12418	502 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	GRX6	Q12438	231 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	BI3	Q9ZZW7	517 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	AI5_BETA	Q9ZZX0	354 aa		4.98	□□□□□ -1.61
CDC28	YBR160W	MPH2	P0CD99	609 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	CAF20	P12962	161 aa	Known RBP	4.97	□□□□□ -1.61
CDC28	YBR160W	TOP3	P13099	656 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	CDC42	P19073	191 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	CNA1	P23287	553 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	CLB2	P24869	491 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	ADY2	P25613	283 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	ICL1	P28240	557 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC28	YBR160W	SPR1	P32603	445 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	AFR1	P33304	620 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	TOD6	P34219	525 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	UTP11	P34247	250 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC28	YBR160W	UBP11	P36026	717 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	YRO2	P38079	344 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	NDT80	P38830	627 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	TMN3	P40071	706 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	MND2	P40577	368 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	CPR7	P47103	393 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	SHE4	P51534	789 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	TAM41	P53230	385 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	VPS62	P53285	467 aa		4.97	□□□□□ -1.61
CDC28	YBR160W	SOL4	P53315	255 aa		4.97	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms