RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 EPN1Q9Y6I3 576 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 FAM186BQ8IYM0 893 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TRIM55Q9BYV6 548 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 HSPA8P11142 646 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 NEK2P51955 445 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TPD52P55327 224 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 POLE2P56282 527 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KIFAP3Q92845 792 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 IL1RAPL2Q9NP60 686 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ABCC4O15439 1325 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 POTEB3A0JP26 581 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 RAB15P59190 212 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 POTEBQ6S5H4 581 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TMCO5AQ8N6Q1 288 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF521Q96K83 1311 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TLDC2A0PJX2 215 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KRT2P35908 639 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 CAV1Q03135 178 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TBC1D23Q9NUY8 699 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 MRFAP1Q9Y605 127 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DNMT1P26358 1616 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 SCHIP1Q9P0W5 487 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 CTTNBP2Q8WZ74 1663 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 THAP12O43422 761 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TBCAO75347 108 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DEXIO95424 95 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KRT5P13647 590 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 OCA2Q04671 838 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 POSTNQ15063 836 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 TMEM67Q5HYA8 995 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 SNX14Q9Y5W7 946 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KLF18A0A0U1RQI7 1052 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 A0A1B0GW55 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 IFIT3O14879 490 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ZBTB7BO15156 539 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L2P0CJ85 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L3P0CJ86 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L4P0CJ87 422 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L5P0CJ88 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L6P0CJ89 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4L7P0CJ90 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 KRT4P19013 534 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ANXA13P27216 316 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ENOX1Q8TC92 643 aaKnown RBP5.14□□□□□ -1.59
SCN1A-220ENST00000641603 DUX4Q9UBX2 424 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 SPG7Q9UQ90 795 aa5.14□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGEF9O43307 516 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CTNND1O60716 968 aaKnown RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PFKFB2O60825 505 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 TUBA4AP68366 448 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 NEK9Q8TD19 979 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 IWS1Q96ST2 819 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CFAP70Q5T0N1 1121 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 KIRREL3Q8IZU9 778 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RCOR1Q9UKL0 485 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MAGI1Q96QZ7 1491 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 BLVRAP53004 296 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 LRRC8CQ8TDW0 803 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 NOC4LQ9BVI4 516 aaKnown RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CTNNAL1Q9UBT7 734 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RPL26L1Q9UNX3 145 aaKnown RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PPP6R2O75170 966 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ZNF189O75820 626 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 POLR3DP05423 398 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 H2AFXP16104 143 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PHEXP78562 749 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 AGBL2Q5U5Z8 902 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ALDH8A1Q9H2A2 487 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 USP40Q9NVE5 1235 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 HACD3Q9P035 362 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 AMFRQ9UKV5 643 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 GMNCA6NCL1 334 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 STRNO43815 780 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PYGBP11216 843 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CERS3Q8IU89 383 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MAGEC3Q8TD91 643 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 OSBPL1AQ9BXW6 950 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 KIF9Q9HAQ2 790 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 SOS2Q07890 1332 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGAP42A6NI28 874 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PGRMC1O00264 195 aaKnown RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PPP1R37O75864 691 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CRELD2Q6UXH1 353 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 MFSD6Q6ZSS7 791 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ATP6V1G3Q96LB4 118 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RBM42Q9BTD8 480 aaKnown RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PFDN4Q9NQP4 134 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RFX7Q2KHR2 1363 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 GADD45BO75293 160 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-220ENST00000641603 RANBP1P43487 201 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 TRAPPC10P48553 1259 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ARHGAP4P98171 946 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 SFMBT2Q5VUG0 894 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 KLC3Q6P597 504 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PEX26Q7Z412 305 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 ESR2Q92731 530 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CHMP6Q96FZ7 201 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 JPH4Q96JJ6 628 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 PLEKHG2Q9H7P9 1386 aa5.13□□□□□ -1.59
SCN1A-220ENST00000641603 CPP00450 1065 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms