RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	CPVL	Q9H3G5	476 aa		12.15	□□□□□ -0.46
NECAP1-223	ENST00000640091	HERC5	Q9UII4	1024 aa	Known RBP	12.15	□□□□□ -0.46
NECAP1-223	ENST00000640091	SBF1	O95248	1867 aa		12.15	□□□□□ -0.47
NECAP1-223	ENST00000640091	PLIN4	Q96Q06	1357 aa		12.15	□□□□□ -0.47
NECAP1-223	ENST00000640091	USP17L5	A8MUK1	530 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	RAD21	O60216	631 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	EEF2	P13639	858 aa	Known RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	NCL	P19338	710 aa	Known RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	KIF5B	P33176	963 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	SIAH1	Q8IUQ4	282 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	TEPSIN	Q96N21	525 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	CNPY2	Q9Y2B0	182 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	SIPA1L1	O43166	1804 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	VEGFA	P15692	232 aa	Predicted RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	AKAP17A	Q02040	695 aa	Known RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	TNFAIP1	Q13829	316 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	GRM4	Q14833	912 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	TFIP11	Q9UBB9	837 aa	Known RBP	12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	ATP6V1D	Q9Y5K8	247 aa		12.14	□□□□□ -0.47
NECAP1-223	ENST00000640091	PALM3	A6NDB9	673 aa	Predicted RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	DEXI	O95424	95 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	PKN1	Q16512	942 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	TPRN	Q4KMQ1	711 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	NBPF12	Q5TAG4	269 aa	Predicted RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	KRT40	Q6A162	431 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	TMEM179	Q6ZVK1	233 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	RNF26	Q9BY78	433 aa	Predicted RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	KANSL2	Q9H9L4	492 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	CABP5	Q9NP86	173 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	KCNJ14	Q9UNX9	436 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	COL2A1	P02458	1487 aa	Predicted RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	STK36	Q9NRP7	1315 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	DDX11L8	A8MPP1	907 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	KLRF2	D3W0D1	207 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	GOLGA6L22	H0YM25	854 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	PRPF3	O43395	683 aa	Known RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	CYTH3	O43739	400 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	PARP1	P09874	1014 aa	Known RBP	12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	PDHB	P11177	359 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	REST	Q13127	1097 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	SLC35G1	Q2M3R5	365 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	DPY19L2	Q6NUT2	758 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	MAP3K14	Q99558	947 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	UBA5	Q9GZZ9	404 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	VAT1L	Q9HCJ6	419 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	GGA3	Q9NZ52	723 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	FZD1	Q9UP38	647 aa		12.13	□□□□□ -0.47
NECAP1-223	ENST00000640091	BAZ2B	Q9UIF8	2168 aa	Known RBP	12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	TBC1D12	O60347	775 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	LMOD1	P29536	600 aa	Predicted RBP	12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	ICA1	Q05084	483 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	DLK2	Q6UY11	383 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	WASF1	Q92558	559 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	LMBRD1	Q9NUN5	540 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	VPS54	Q9P1Q0	977 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	CNTNAP5	Q8WYK1	1306 aa		12.12	□□□□□ -0.47
NECAP1-223	ENST00000640091	KIF28P	B7ZC32	967 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	FIBP	O43427	364 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	GRIN3B	O60391	1043 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	TRIM29	Q14134	588 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	USP48	Q86UV5	1035 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	SHISA4	Q96DD7	197 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	GPCPD1	Q9NPB8	672 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	DICER1	Q9UPY3	1922 aa	Known RBP	12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091		A0A1W2PRG0	241 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	TRAK2	O60296	914 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	MAP3K10	Q02779	954 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	CEBPZ	Q03701	1054 aa	Known RBP	12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	KCTD1	Q719H9	257 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	CCDC84	Q86UT8	332 aa	Predicted RBP	12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	MKL1	Q969V6	931 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	NYAP2	Q9P242	653 aa		12.11	□□□□□ -0.47
NECAP1-223	ENST00000640091	PHF20L1	A8MW92	1017 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	CAP2	P40123	477 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	ECE1	P42892	770 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	GNAQ	P50148	359 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	KIF23	Q02241	960 aa	Predicted RBP	12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	TTBK2	Q6IQ55	1244 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	FTO	Q9C0B1	505 aa	Known RBP eCLIP	12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	ADARB2	Q9NS39	739 aa	Known RBP	12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	ZBTB21	Q9ULJ3	1066 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	ISY1	Q9ULR0	285 aa	Known RBP	12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	MYH8	P13535	1937 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	BTBD18	B2RXH4	712 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091		F5H6K3	240 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	SNHG28	P0DPA3	235 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	SLC16A2	P36021	539 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	KLRC3	Q07444	240 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	HOMER1	Q86YM7	354 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	ACER1	Q8TDN7	264 aa		12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.1	□□□□□ -0.47
NECAP1-223	ENST00000640091	SOCS7	O14512	581 aa		12.09	□□□□□ -0.47
NECAP1-223	ENST00000640091	GADD45B	O75293	160 aa	Predicted RBP	12.09	□□□□□ -0.47
NECAP1-223	ENST00000640091	MMP1	P03956	469 aa		12.09	□□□□□ -0.47
NECAP1-223	ENST00000640091	SCG2	P13521	617 aa		12.09	□□□□□ -0.47
NECAP1-223	ENST00000640091	KRT85	P78386	507 aa		12.09	□□□□□ -0.47
NECAP1-223	ENST00000640091	GNL2	Q13823	731 aa	Known RBP	12.09	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms