RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PLEKHA8P1O95397 391 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 CASP1P29466 404 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 CHMP4BP1P59074 171 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 TROAPQ12815 778 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 BRD3Q15059 726 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 CEP112Q8N8E3 955 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 CPLX3Q8WVH0 158 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 BRIP1Q9BX63 1249 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 ABCF2Q9UG63 623 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 CDC23Q9UJX2 597 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 TUBB4BP68371 445 aa22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 GNL3LQ9NVN8 582 aaKnown RBP22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 TTF2Q9UNY4 1162 aaKnown RBP22.8■■□□□ 1.24
SYNGAP1-227ENST00000638142 GYPCP04921 128 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 FGRP09769 529 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 CASP14P31944 242 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 SMC1AQ14683 1233 aaKnown RBP22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 ZNF174Q15697 407 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 NPY5RQ15761 445 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 TMTC3Q6ZXV5 915 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 SMYD4Q8IYR2 804 aaPredicted RBP22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 IQUBQ8NA54 791 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 FUT8Q9BYC5 575 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 WNT7AO00755 349 aa22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 CDC5LQ99459 802 aaKnown RBP22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 LIMA1Q9UHB6 759 aaKnown RBP22.79■■□□□ 1.24
SYNGAP1-227ENST00000638142 MYH2Q9UKX2 1941 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 KAT6BQ8WYB5 2073 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 PHLPP1O60346 1717 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 hCG_1642624A0A1W2PR95 340 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 LRRC10BA6NIK2 292 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 POTEB2H3BUK9 544 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 SPAG1Q07617 926 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 PTGDRQ13258 359 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 E2F4Q16254 413 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 TMTC1Q8IUR5 882 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 CCDC87Q9NVE4 849 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 CTNND2Q9UQB3 1225 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 LAMB2P55268 1798 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 CICQ96RK0 1608 aaPredicted RBP22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 DLEC1Q9Y238 1755 aa22.78■■□□□ 1.24
SYNGAP1-227ENST00000638142 A0A0U1RQG5 324 aaPredicted RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 TULP2O00295 520 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 POLR3GO15318 223 aaPredicted RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 OAS2P29728 719 aaKnown RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 TRAPPC10P48553 1259 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 TMEM51Q9NW97 253 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 XDHP47989 1333 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 NTSR2O95665 410 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 IRX5P78411 483 aaPredicted RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 INTS5Q6P9B9 1019 aaKnown RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 RWDD2AQ9UIY3 292 aa22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 IQSEC3Q9UPP2 1182 aaPredicted RBP22.77■■□□□ 1.24
SYNGAP1-227ENST00000638142 SMIM22K7EJ46 135 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 EXOC5O00471 708 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 FXR1P51114 621 aaKnown RBP eCLIP22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 HNRNPH2P55795 449 aaKnown RBP22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 TRIM14Q14142 442 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 HNRNPLLQ8WVV9 542 aaKnown RBP22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 CNTNAP5Q8WYK1 1306 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 CAMTA2O94983 1202 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 KRT31Q15323 416 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 LONRF2Q1L5Z9 754 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 ZNF569Q5MCW4 686 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 CACNA1SQ13698 1873 aa22.76■■□□□ 1.23
SYNGAP1-227ENST00000638142 CTAGE9A4FU28 777 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 GTPBP6O43824 516 aaPredicted RBP22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 TXLNBQ8N3L3 684 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 ANKRD20A12PQ8NF67 263 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 N4BP3O15049 544 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 PDXDC2PQ6P474 469 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 MYO1AQ9UBC5 1043 aa22.75■■□□□ 1.23
SYNGAP1-227ENST00000638142 NOM1Q5C9Z4 860 aaKnown RBP22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 RRAGBQ5VZM2 374 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 CTCFLQ8NI51 663 aaPredicted RBP22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 ABHD10Q9NUJ1 306 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 A0A0U1RQJ8 604 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 CCT6AP40227 531 aaKnown RBP22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 PAK1Q13153 545 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 KIF4BQ2VIQ3 1234 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 MSANTD4Q8NCY6 345 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 ATRIPQ8WXE1 791 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 RMND1Q9NWS8 449 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 RAB21Q9UL25 225 aa22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 NIP7Q9Y221 180 aaKnown RBP eCLIP22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 COL1A1P02452 1464 aaPredicted RBP22.74■■□□□ 1.23
SYNGAP1-227ENST00000638142 CYP2D7A0A087X1C5 515 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 MAP2K7O14733 419 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 USP5P45974 858 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 CRKLP46109 303 aaKnown RBP22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 GYG1P46976 350 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 GPS2Q13227 327 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 UBE4AQ14139 1066 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 CYP26C1Q6V0L0 522 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 COPB1P53618 953 aaKnown RBP22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 DYNLL1P63167 89 aaKnown RBP22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 STAMQ92783 540 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 BLZF1Q9H2G9 400 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 ZSWIM4Q9H7M6 989 aa22.73■■□□□ 1.23
SYNGAP1-227ENST00000638142 ANKZF1Q9H8Y5 726 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms