RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 V9GY48 417 aaPredicted RBP23.38■■□□□ 1.33
CLN3-250ENST00000636839 TNNI2P48788 182 aa23.37■■□□□ 1.33
CLN3-250ENST00000636839 GRM4Q14833 912 aa23.37■■□□□ 1.33
CLN3-250ENST00000636839 C8orf76Q96K31 380 aa23.37■■□□□ 1.33
CLN3-250ENST00000636839 GBP4Q96PP9 640 aa23.37■■□□□ 1.33
CLN3-250ENST00000636839 BAZ2BQ9UIF8 2168 aaKnown RBP23.37■■□□□ 1.33
CLN3-250ENST00000636839 EEF2P13639 858 aaKnown RBP23.37■■□□□ 1.33
CLN3-250ENST00000636839 VEGFAP15692 232 aaPredicted RBP23.37■■□□□ 1.33
CLN3-250ENST00000636839 RBM28Q9NW13 759 aaKnown RBP23.37■■□□□ 1.33
CLN3-250ENST00000636839 GGA3Q9NZ52 723 aa23.37■■□□□ 1.33
CLN3-250ENST00000636839 NBPF12Q5TAG4 269 aaPredicted RBP23.36■■□□□ 1.33
CLN3-250ENST00000636839 GDPD2Q9HCC8 539 aa23.36■■□□□ 1.33
CLN3-250ENST00000636839 GREB1LQ9C091 1923 aaPredicted RBP23.35■■□□□ 1.33
CLN3-250ENST00000636839 TNFAIP1Q13829 316 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 PPP2R5BQ15173 497 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 FBXO18Q8NFZ0 1043 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 SHISA4Q96DD7 197 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 FZD1Q9UP38 647 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 KIF3AQ9Y496 699 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 PKN1Q16512 942 aa23.35■■□□□ 1.33
CLN3-250ENST00000636839 FRMPD2Q68DX3 1309 aaPredicted RBP23.34■■□□□ 1.33
CLN3-250ENST00000636839 CNTNAP5Q8WYK1 1306 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 PALM3A6NDB9 673 aaPredicted RBP23.34■■□□□ 1.33
CLN3-250ENST00000636839 DNM1Q05193 864 aaKnown RBP23.34■■□□□ 1.33
CLN3-250ENST00000636839 RESTQ13127 1097 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 TMEM179Q6ZVK1 233 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 TRIM22Q8IYM9 498 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 KANSL2Q9H9L4 492 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 STK36Q9NRP7 1315 aa23.34■■□□□ 1.33
CLN3-250ENST00000636839 CYTH3O43739 400 aa23.33■■□□□ 1.33
CLN3-250ENST00000636839 TBC1D12O60347 775 aa23.33■■□□□ 1.33
CLN3-250ENST00000636839 PDHBP11177 359 aa23.33■■□□□ 1.33
CLN3-250ENST00000636839 LMOD1P29536 600 aaPredicted RBP23.33■■□□□ 1.33
CLN3-250ENST00000636839 ICA1Q05084 483 aa23.33■■□□□ 1.33
CLN3-250ENST00000636839 CCDC84Q86UT8 332 aaPredicted RBP23.33■■□□□ 1.33
CLN3-250ENST00000636839 CNPY2Q9Y2B0 182 aa23.33■■□□□ 1.33
CLN3-250ENST00000636839 GRIN3BO60391 1043 aa23.33■■□□□ 1.32
CLN3-250ENST00000636839 KIF5BP33176 963 aa23.33■■□□□ 1.32
CLN3-250ENST00000636839 MAP3K10Q02779 954 aa23.33■■□□□ 1.32
CLN3-250ENST00000636839 MAP3K14Q99558 947 aa23.33■■□□□ 1.32
CLN3-250ENST00000636839 PHF20L1A8MW92 1017 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 PRPF3O43395 683 aaKnown RBP23.32■■□□□ 1.32
CLN3-250ENST00000636839 RAD21O60216 631 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 KRT40Q6A162 431 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 DPY19L2Q6NUT2 758 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 RNF26Q9BY78 433 aaPredicted RBP23.32■■□□□ 1.32
CLN3-250ENST00000636839 ADARB2Q9NS39 739 aaKnown RBP23.32■■□□□ 1.32
CLN3-250ENST00000636839 KCNJ14Q9UNX9 436 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 A0A1W2PRG0 241 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 KLRF2D3W0D1 207 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 DEXIO95424 95 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 PARP1P09874 1014 aaKnown RBP23.32■■□□□ 1.32
CLN3-250ENST00000636839 UBA5Q9GZZ9 404 aa23.32■■□□□ 1.32
CLN3-250ENST00000636839 KIF28PB7ZC32 967 aa23.31■■□□□ 1.32
CLN3-250ENST00000636839 CABP5Q9NP86 173 aa23.31■■□□□ 1.32
CLN3-250ENST00000636839 NYAP2Q9P242 653 aa23.31■■□□□ 1.32
CLN3-250ENST00000636839 ECE1P42892 770 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 ACER1Q8TDN7 264 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 MKL1Q969V6 931 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 GPCPD1Q9NPB8 672 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 VPS54Q9P1Q0 977 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 ZBTB21Q9ULJ3 1066 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 PRPF40AO75400 957 aaKnown RBP23.3■■□□□ 1.32
CLN3-250ENST00000636839 PDIA4P13667 645 aaKnown RBP23.3■■□□□ 1.32
CLN3-250ENST00000636839 CAP2P40123 477 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 AKAP17AQ02040 695 aaKnown RBP23.3■■□□□ 1.32
CLN3-250ENST00000636839 TTBK2Q6IQ55 1244 aa23.3■■□□□ 1.32
CLN3-250ENST00000636839 TFIP11Q9UBB9 837 aaKnown RBP23.3■■□□□ 1.32
CLN3-250ENST00000636839 SNHG28P0DPA3 235 aa23.29■■□□□ 1.32
CLN3-250ENST00000636839 NCLP19338 710 aaKnown RBP23.29■■□□□ 1.32
CLN3-250ENST00000636839 KCTD1Q719H9 257 aa23.29■■□□□ 1.32
CLN3-250ENST00000636839 APOBEC3FQ8IUX4 373 aaKnown RBP23.29■■□□□ 1.32
CLN3-250ENST00000636839 VAT1LQ9HCJ6 419 aa23.29■■□□□ 1.32
CLN3-250ENST00000636839 TCHHQ07283 1943 aa23.29■■□□□ 1.32
CLN3-250ENST00000636839 POLR2AP24928 1970 aaKnown RBP23.29■■□□□ 1.32
CLN3-250ENST00000636839 GLIS2Q9BZE0 524 aaPredicted RBP23.28■■□□□ 1.32
CLN3-250ENST00000636839 MYH4Q9Y623 1939 aa23.28■■□□□ 1.32
CLN3-250ENST00000636839 GLTPD2A6NH11 291 aa23.28■■□□□ 1.32
CLN3-250ENST00000636839 L3MBTL3Q96JM7 780 aaPredicted RBP23.28■■□□□ 1.32
CLN3-250ENST00000636839 NUP88Q99567 741 aaPredicted RBP23.28■■□□□ 1.32
CLN3-250ENST00000636839 LMBRD1Q9NUN5 540 aa23.28■■□□□ 1.32
CLN3-250ENST00000636839 KIAA1755Q5JYT7 1200 aa23.27■■□□□ 1.32
CLN3-250ENST00000636839 WASF1Q92558 559 aa23.27■■□□□ 1.32
CLN3-250ENST00000636839 FTOQ9C0B1 505 aaKnown RBP eCLIP23.27■■□□□ 1.32
CLN3-250ENST00000636839 POTECB2RU33 542 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 ADM5C9JUS6 153 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 FIBPO43427 364 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 INPP5BP32019 993 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 SLC16A2P36021 539 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 GNAQP50148 359 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 KIF23Q02241 960 aaPredicted RBP23.26■■□□□ 1.31
CLN3-250ENST00000636839 ZNF543Q08ER8 600 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 GPKOWQ92917 476 aaPredicted RBP eCLIP23.26■■□□□ 1.31
CLN3-250ENST00000636839 ATP6V1DQ9Y5K8 247 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 DDX11L8A8MPP1 907 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 F5H6K3 240 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 KLRC3Q07444 240 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 TPRNQ4KMQ1 711 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 SLFN13Q68D06 897 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 USP48Q86UV5 1035 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms