RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SYT17Q9BSW7 474 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 BRMS1Q9HCU9 246 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 POLR3EQ9NVU0 708 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 MAD2L2Q9UI95 211 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 ZBTB12Q9Y330 459 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 PCDHAC2Q9Y5I4 1007 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 PPP2R3BQ9Y5P8 575 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 DDX49Q9Y6V7 483 aaKnown RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 MORC2Q9Y6X9 1032 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 SCN4AP35499 1836 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 GOLGB1Q14789 3259 aaKnown RBP12.22□□□□□ -0.45
CLN3-248ENST00000636355 PITPNM2Q9BZ72 1349 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 ZNF541Q9H0D2 1346 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 FIBPO43427 364 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 PLEKHA8P1O95397 391 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 YEATS4O95619 227 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 SCG2P13521 617 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 CALML3P27482 149 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 PRELPP51888 382 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 CACNB3P54284 484 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 PFKFB3Q16875 520 aaPredicted RBP12.22□□□□□ -0.45
CLN3-248ENST00000636355 GALNT17Q6IS24 598 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 APOBEC3FQ8IUX4 373 aaKnown RBP12.22□□□□□ -0.45
CLN3-248ENST00000636355 TEX2Q8IWB9 1127 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 MICALL2Q8IY33 904 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 GMCL1P1Q8NEA9 526 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 CCDC12Q8WUD4 166 aaPredicted RBP12.22□□□□□ -0.45
CLN3-248ENST00000636355 MKL1Q969V6 931 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 CNPY2Q9Y2B0 182 aa12.22□□□□□ -0.45
CLN3-248ENST00000636355 PAPPA2Q9BXP8 1791 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 PRPF40AO75400 957 aaKnown RBP12.21□□□□□ -0.45
CLN3-248ENST00000636355 PDHBP11177 359 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 NASPP49321 788 aaPredicted RBP12.21□□□□□ -0.45
CLN3-248ENST00000636355 PKN1Q16512 942 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 ABCB5Q2M3G0 1257 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 KIF4BQ2VIQ3 1234 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 MYSM1Q5VVJ2 828 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 NOSTRINQ8IVI9 506 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 ZFPM1Q8IX07 1006 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 SRBD1Q8N5C6 995 aaKnown RBP12.21□□□□□ -0.45
CLN3-248ENST00000636355 KCNG4Q8TDN1 519 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 DCAF4Q8WV16 495 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 SPATA32Q96LK8 384 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 PHF20Q9BVI0 1012 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 SH2D4AQ9H788 454 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 CABP5Q9NP86 173 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 RTEL1Q9NZ71 1219 aa12.21□□□□□ -0.45
CLN3-248ENST00000636355 CLRN2A0PK11 232 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 TCP10L2B9ZVM9 353 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 KLRF2D3W0D1 207 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 H7C1D1 291 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 ICA1Q05084 483 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 GNL2Q13823 731 aaKnown RBP12.2□□□□□ -0.46
CLN3-248ENST00000636355 GPR162Q16538 588 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 RILPL1Q5EBL4 403 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 RBM26Q5T8P6 1007 aaKnown RBP12.2□□□□□ -0.46
CLN3-248ENST00000636355 PPP1R18Q6NYC8 613 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 USP48Q86UV5 1035 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 DAGLBQ8NCG7 672 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 LEO1Q8WVC0 666 aaPredicted RBP12.2□□□□□ -0.46
CLN3-248ENST00000636355 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLN3-248ENST00000636355 VEZTQ9HBM0 779 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 GPRC5DQ9NZD1 345 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 PGAP2Q9UHJ9 254 aa12.2□□□□□ -0.46
CLN3-248ENST00000636355 BAZ2BQ9UIF8 2168 aaKnown RBP12.2□□□□□ -0.46
CLN3-248ENST00000636355 ESYT2A0FGR8 921 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 MPHOSPH10O00566 681 aaKnown RBP12.19□□□□□ -0.46
CLN3-248ENST00000636355 BMP15O95972 392 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 KRT2P35908 639 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 ZNF543Q08ER8 600 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 ARHGAP27Q6ZUM4 889 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 DIS3L2Q8IYB7 885 aaKnown RBP12.19□□□□□ -0.46
CLN3-248ENST00000636355 JMYQ8N9B5 988 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 RRP36Q96EU6 259 aaKnown RBP12.19□□□□□ -0.46
CLN3-248ENST00000636355 GMCL1Q96IK5 515 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 RIOX1Q9H6W3 641 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 ARHGEF10LQ9HCE6 1279 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 SEC63Q9UGP8 760 aaKnown RBP12.19□□□□□ -0.46
CLN3-248ENST00000636355 CNOT7Q9UIV1 285 aaKnown RBP12.19□□□□□ -0.46
CLN3-248ENST00000636355 RCOR1Q9UKL0 485 aa12.19□□□□□ -0.46
CLN3-248ENST00000636355 ASNSP08243 561 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 GUCY1A2P33402 732 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 TRAPPC10P48553 1259 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 GUCY1B3Q02153 619 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 NBPF9Q3BBW0 867 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 DCAF15Q66K64 600 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 GPT2Q8TD30 523 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 AIFM3Q96NN9 605 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 BARHL2Q9NY43 387 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 CLIP2Q9UDT6 1046 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 ZBTB21Q9ULJ3 1066 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 GJA3Q9Y6H8 435 aa12.18□□□□□ -0.46
CLN3-248ENST00000636355 V9GY48 417 aaPredicted RBP12.18□□□□□ -0.46
CLN3-248ENST00000636355 RBBP6Q7Z6E9 1792 aaKnown RBP12.18□□□□□ -0.46
CLN3-248ENST00000636355 WDR90Q96KV7 1748 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 GOLGA6L4A6NEF3 574 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 KIF28PB7ZC32 967 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 TRAF1Q13077 416 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 RASA3Q14644 834 aa12.17□□□□□ -0.46
CLN3-248ENST00000636355 GSE1Q14687 1217 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms