RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ZNF236Q9UL36 1845 aa17.88■□□□□ 0.45
PNKP-218ENST00000625299 IGSF3O75054 1194 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 POLR3DP05423 398 aaPredicted RBP17.87■□□□□ 0.45
PNKP-218ENST00000625299 PLCD1P51178 756 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 PLS1Q14651 629 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 MYLIPQ8WY64 445 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 SPATC1LQ9H0A9 340 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 PRUNE2Q8WUY3 3088 aa17.87■□□□□ 0.45
PNKP-218ENST00000625299 ERCC3P19447 782 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 GUCY1A2P33402 732 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 ADCYAP1R1P41586 468 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 MAP3K12Q12852 859 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 PRAMEF19Q5SWL8 479 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 OLFML2BQ68BL8 750 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 SAMD1Q6SPF0 538 aaPredicted RBP17.86■□□□□ 0.45
PNKP-218ENST00000625299 SSH3Q8TE77 659 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 ANTXR1Q9H6X2 564 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 PDLIM7Q9NR12 457 aa17.86■□□□□ 0.45
PNKP-218ENST00000625299 A0A0G2JMZ2 1700 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 SEPT4O43236 478 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 ATP8B2P98198 1209 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 COG2Q14746 738 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 SH3RF1Q7Z6J0 888 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 NCAPG2Q86XI2 1143 aa17.85■□□□□ 0.45
PNKP-218ENST00000625299 EAF2Q96CJ1 260 aaPredicted RBP17.85■□□□□ 0.45
PNKP-218ENST00000625299 SPTBN5Q9NRC6 3674 aaKnown RBP17.85■□□□□ 0.45
PNKP-218ENST00000625299 A0A1W2PRG0 241 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 STRNO43815 780 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 COBLO75128 1261 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 IGHA2P01877 340 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 FOSL2P15408 326 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 EVX2Q03828 476 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 FAM47AQ5JRC9 791 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 TTYH1Q9H313 450 aaPredicted RBP17.84■□□□□ 0.45
PNKP-218ENST00000625299 SLC5A4Q9NY91 659 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 HOXC10Q9NYD6 342 aa17.84■□□□□ 0.45
PNKP-218ENST00000625299 MYH8P13535 1937 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 MAGEB6P1A0A0J9YX57 407 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 TRIM43BA6NCK2 446 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 SMAD3P84022 425 aaKnown RBP17.83■□□□□ 0.44
PNKP-218ENST00000625299 SNX17Q15036 470 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 LRRC41Q15345 812 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 TRIM43Q96BQ3 446 aaPredicted RBP17.83■□□□□ 0.44
PNKP-218ENST00000625299 MCM9Q9NXL9 1143 aa17.83■□□□□ 0.44
PNKP-218ENST00000625299 FLOT1O75955 427 aa17.82■□□□□ 0.44
PNKP-218ENST00000625299 TLE2Q04725 743 aa17.82■□□□□ 0.44
PNKP-218ENST00000625299 ZKSCAN2Q63HK3 967 aa17.82■□□□□ 0.44
PNKP-218ENST00000625299 SPICE1Q8N0Z3 855 aa17.82■□□□□ 0.44
PNKP-218ENST00000625299 SHCBP1Q8NEM2 672 aa17.82■□□□□ 0.44
PNKP-218ENST00000625299 RNPC3Q96LT9 517 aaKnown RBP17.82■□□□□ 0.44
PNKP-218ENST00000625299 RIOK1Q9BRS2 568 aaKnown RBP17.82■□□□□ 0.44
PNKP-218ENST00000625299 KIAA1755Q5JYT7 1200 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 AACSQ86V21 672 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 CLEC10AQ8IUN9 316 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 ATG4CQ96DT6 458 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 MAML3Q96JK9 1138 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 CRNKL1Q9BZJ0 848 aaKnown RBP17.81■□□□□ 0.44
PNKP-218ENST00000625299 MROH8Q9H579 483 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 XPNPEP3Q9NQH7 507 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 NOP58Q9Y2X3 529 aaKnown RBP17.81■□□□□ 0.44
PNKP-218ENST00000625299 SMCHD1A6NHR9 2005 aa17.81■□□□□ 0.44
PNKP-218ENST00000625299 ZNFX1Q9P2E3 1918 aaKnown RBP17.8■□□□□ 0.44
PNKP-218ENST00000625299 CLTBP09497 229 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 CYP2D6P10635 497 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 DSG3P32926 999 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 GABPAQ06546 454 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 MB21D1Q8N884 522 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 SLC44A5Q8NCS7 719 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 SDR42E1Q8WUS8 393 aa17.8■□□□□ 0.44
PNKP-218ENST00000625299 PQBP1O60828 265 aaKnown RBP17.79■□□□□ 0.44
PNKP-218ENST00000625299 RARBP10826 455 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 FCER1AP12319 257 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 ITGB8P26012 769 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 TMEM179Q6ZVK1 233 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 ITPRIPQ8IWB1 547 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 FTSJ3Q8IY81 847 aaKnown RBP17.79■□□□□ 0.44
PNKP-218ENST00000625299 ABRAQ8N0Z2 381 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 ARHGEF10LQ9HCE6 1279 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 TACC3Q9Y6A5 838 aa17.79■□□□□ 0.44
PNKP-218ENST00000625299 COL11A1P12107 1806 aaPredicted RBP17.79■□□□□ 0.44
PNKP-218ENST00000625299 PLXNA1Q9UIW2 1896 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PARP14Q460N5 1801 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PGK1P00558 417 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PGK2P07205 417 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 RAG1P15918 1043 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PDE6AP16499 860 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 EPHB4P54760 987 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 ICA1Q05084 483 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 SLC9C2Q5TAH2 1124 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 C1orf53Q5VUE5 145 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 RNF180Q86T96 592 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 DYNLL2Q96FJ2 89 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 MMP19Q99542 508 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PRDM6Q9NQX0 595 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 PHF24Q9UPV7 400 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 EXOC6BQ9Y2D4 811 aa17.78■□□□□ 0.44
PNKP-218ENST00000625299 AKR1B1P15121 316 aa17.77■□□□□ 0.44
PNKP-218ENST00000625299 TMED8Q6PL24 325 aaPredicted RBP17.77■□□□□ 0.44
PNKP-218ENST00000625299 LCORLQ8N3X6 602 aa17.77■□□□□ 0.44
PNKP-218ENST00000625299 LENG1Q96BZ8 264 aaPredicted RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms