RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 PALD1Q9ULE6 856 aa17.18■□□□□ 0.34
SNX1-214ENST00000625244 PA2G4Q9UQ80 394 aaKnown RBP17.18■□□□□ 0.34
SNX1-214ENST00000625244 FAM86C2PA6NEL3 165 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 MFSD5Q6N075 450 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 TGFBRAP1Q8WUH2 860 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 KHSRPQ92945 711 aaKnown RBP eCLIP17.17■□□□□ 0.341e-7■□□□□ 8
SNX1-214ENST00000625244 XAGE2Q96GT9 111 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 TRIM34Q9BYJ4 488 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 NKX2-4Q9H2Z4 354 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 RAI14Q9P0K7 980 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 HMG20BQ9P0W2 317 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 MSRAQ9UJ68 235 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 TBX21Q9UL17 535 aa17.17■□□□□ 0.34
SNX1-214ENST00000625244 DCDC2CA8MYV0 355 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 STRNO43815 780 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 GPR37L1O60883 481 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 ACRP10323 421 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 RARBP10826 455 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 AAK1Q2M2I8 961 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 CCDC184Q52MB2 194 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 RNF180Q86T96 592 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 ACER1Q8TDN7 264 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 YBX2Q9Y2T7 364 aaKnown RBP17.16■□□□□ 0.34
SNX1-214ENST00000625244 SMCHD1A6NHR9 2005 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 FLT1P17948 1338 aa17.16■□□□□ 0.34
SNX1-214ENST00000625244 CSF2RAP15509 400 aa17.15■□□□□ 0.34
SNX1-214ENST00000625244 ERCC3P19447 782 aa17.15■□□□□ 0.34
SNX1-214ENST00000625244 PPIGQ13427 754 aaKnown RBP eCLIP17.15■□□□□ 0.34
SNX1-214ENST00000625244 RAB30Q15771 203 aa17.15■□□□□ 0.34
SNX1-214ENST00000625244 ZNF365Q70YC5 407 aa17.15■□□□□ 0.34
SNX1-214ENST00000625244 MAML3Q96JK9 1138 aa17.15■□□□□ 0.34
SNX1-214ENST00000625244 RPAP3Q9H6T3 665 aaPredicted RBP17.15■□□□□ 0.34
SNX1-214ENST00000625244 AATFQ9NY61 560 aaKnown RBP eCLIP17.15■□□□□ 0.34
SNX1-214ENST00000625244 ZNF236Q9UL36 1845 aa17.14■□□□□ 0.34
SNX1-214ENST00000625244 A0A1B0GUL7 405 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 ERC2O15083 957 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 USP14P54578 494 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 CCDC174Q6PII3 467 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 SPATA5Q8NB90 893 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 LENG1Q96BZ8 264 aaPredicted RBP17.14■□□□□ 0.33
SNX1-214ENST00000625244 SPATC1LQ9H0A9 340 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 KIAA1683Q9H0B3 1180 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 SLC28A3Q9HAS3 691 aa17.14■□□□□ 0.33
SNX1-214ENST00000625244 SAP30BPQ9UHR5 308 aaKnown RBP17.14■□□□□ 0.33
SNX1-214ENST00000625244 TAL1P17542 331 aaPredicted RBP17.13■□□□□ 0.33
SNX1-214ENST00000625244 SKIV2LQ15477 1246 aaKnown RBP17.13■□□□□ 0.33
SNX1-214ENST00000625244 MRPL50Q8N5N7 158 aaKnown RBP17.13■□□□□ 0.33
SNX1-214ENST00000625244 STARD7Q9NQZ5 370 aa17.13■□□□□ 0.33
SNX1-214ENST00000625244 PRRC2BQ5JSZ5 2229 aaKnown RBP17.13■□□□□ 0.33
SNX1-214ENST00000625244 ADAMTS4O75173 837 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 MRE11P49959 708 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 ACLYP53396 1101 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 MVPQ14764 893 aaKnown RBP17.12■□□□□ 0.33
SNX1-214ENST00000625244 RAB3GAP1Q15042 981 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 PSRC1Q6PGN9 363 aaPredicted RBP17.12■□□□□ 0.33
SNX1-214ENST00000625244 SHCBP1Q8NEM2 672 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 HERVK_113Q902F9 699 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 NOL10Q9BSC4 688 aaKnown RBP17.12■□□□□ 0.33
SNX1-214ENST00000625244 SLC5A4Q9NY91 659 aa17.12■□□□□ 0.33
SNX1-214ENST00000625244 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.12■□□□□ 0.33
SNX1-214ENST00000625244 USP34Q70CQ2 3546 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 TLL1O43897 1013 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 BAG3O95817 575 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 TATDN1Q6P1N9 297 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 ADGRA1Q86SQ6 560 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 TSEN34Q9BSV6 310 aaKnown RBP17.11■□□□□ 0.33
SNX1-214ENST00000625244 COPRSQ9NQ92 184 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 NRBP1Q9UHY1 535 aa17.11■□□□□ 0.33
SNX1-214ENST00000625244 RABGGTBP53611 331 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 PPP4CP60510 307 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 TFCP2Q12800 502 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 ABRAQ8N0Z2 381 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 TMEM199Q8N511 208 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 LRP2BPQ9P2M1 347 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 PTPRCP08575 1304 aa17.1■□□□□ 0.33
SNX1-214ENST00000625244 HLA-DOAP06340 250 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 ZNF865P0CJ78 1059 aaPredicted RBP17.09■□□□□ 0.33
SNX1-214ENST00000625244 MYOGP15173 224 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 PLCG2P16885 1265 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 COG2Q14746 738 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 NAA16Q6N069 864 aaPredicted RBP17.09■□□□□ 0.33
SNX1-214ENST00000625244 NCAPG2Q86XI2 1143 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 NUP133Q8WUM0 1156 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 NEUROD6Q96NK8 337 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 PPP1R12CQ9BZL4 782 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 MROH8Q9H579 483 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 HOXC10Q9NYD6 342 aa17.09■□□□□ 0.33
SNX1-214ENST00000625244 ROBO3Q96MS0 1386 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 ZNF521Q96K83 1311 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 PI4K2BG5E9Z4 385 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 SMIM22K7EJ46 135 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 APBB1O00213 710 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 RFXAPO00287 272 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 MCAMP43121 646 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 CDK7P50613 346 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 PLS1Q14651 629 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 KCNA10Q16322 511 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 PPP2R2DQ66LE6 453 aa17.08■□□□□ 0.32
SNX1-214ENST00000625244 CCSAPQ6IQ19 270 aaPredicted RBP17.08■□□□□ 0.32
SNX1-214ENST00000625244 KLHDC9Q8NEP7 349 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms