RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 ASNSP08243 561 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 NF2P35240 595 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 RCAN1P53805 252 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 SEPT2Q15019 361 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 SHROOM1Q2M3G4 852 aaPredicted RBP9.39□□□□□ -0.91
CPNE3-209ENST00000620393 MAP1SQ66K74 1059 aaPredicted RBP9.39□□□□□ -0.91
CPNE3-209ENST00000620393 CATIPQ7Z7H3 387 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 NECAB1Q8N987 351 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 KLRG1Q96E93 195 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 CDCA5Q96FF9 252 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 KAT14Q9H8E8 782 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 CLIP2Q9UDT6 1046 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 STX8Q9UNK0 236 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 HPS5Q9UPZ3 1129 aa9.39□□□□□ -0.91
CPNE3-209ENST00000620393 DDAH1O94760 285 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 CALM1P0DP23 149 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 CALM2P0DP24 149 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 CALM3P0DP25 149 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 EEF2P13639 858 aaKnown RBP9.38□□□□□ -0.91
CPNE3-209ENST00000620393 INPP5BP32019 993 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 MAP3K9P80192 1104 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 SCRN1Q12765 414 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 TROAPQ12815 778 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 STK3Q13188 491 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 RAB3GAP1Q15042 981 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 PPP2R5BQ15173 497 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 APOA5Q6Q788 366 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 ZNF654Q8IZM8 581 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 FANCBQ8NB91 859 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 PNMA1Q8ND90 353 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 INTS4Q96HW7 963 aaKnown RBP9.38□□□□□ -0.91
CPNE3-209ENST00000620393 MAP3K14Q99558 947 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 FAM217BQ9NTX9 383 aaPredicted RBP9.38□□□□□ -0.91
CPNE3-209ENST00000620393 ZBTB21Q9ULJ3 1066 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 NAP1L2Q9ULW6 460 aaPredicted RBP9.38□□□□□ -0.91
CPNE3-209ENST00000620393 TIAM2Q8IVF5 1701 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 WDR90Q96KV7 1748 aa9.38□□□□□ -0.91
CPNE3-209ENST00000620393 BAZ2AQ9UIF9 1905 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 CCDC196A0A1B0GTZ2 297 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 GOLGA8BA8MQT2 603 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 DHX16O60231 1041 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 ADD1P35611 737 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 IREB2P48200 963 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 METAP2P50579 478 aaKnown RBP eCLIP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 CCT2P78371 535 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 ATP2B2Q01814 1243 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 ICA1Q05084 483 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 ST3GAL1Q11201 340 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 PRKG1Q13976 671 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 MAP3K11Q16584 847 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 NOL9Q5SY16 702 aaKnown RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 CCDC83Q8IWF9 413 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 SCYL3Q8IZE3 742 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 NUP133Q8WUM0 1156 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 GTF3C6Q969F1 213 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 WRNIP1Q96S55 665 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 MYL10Q9BUA6 226 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 GPBP1L1Q9HC44 474 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 SYNPO2Q9UMS6 1093 aa9.37□□□□□ -0.91
CPNE3-209ENST00000620393 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-209ENST00000620393 A0A1W2PRG0 241 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 GOLGA8AA7E2F4 631 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 USP17L5A8MUK1 530 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 TRAF5O00463 557 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 ITGBL1O95965 494 aaPredicted RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 HSP90AA1P07900 732 aaKnown RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 RXRAP19793 462 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 CDC27P30260 824 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 GNAQP50148 359 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 RTN1Q16799 776 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 ARMC9Q7Z3E5 817 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 MICU3Q86XE3 530 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 RAB11FIP4Q86YS3 637 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 CLEC10AQ8IUN9 316 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 ACER1Q8TDN7 264 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 ZKSCAN4Q969J2 545 aaPredicted RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 LLPHQ9BRT6 129 aaKnown RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 WDR18Q9BV38 432 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 NCOA5Q9HCD5 579 aaKnown RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 ARHGEF10LQ9HCE6 1279 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 CWC22Q9HCG8 908 aaKnown RBP9.36□□□□□ -0.91
CPNE3-209ENST00000620393 PICK1Q9NRD5 415 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 FZD1Q9UP38 647 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 TMX2Q9Y320 296 aa9.36□□□□□ -0.91
CPNE3-209ENST00000620393 SCN4AP35499 1836 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 PALM3A6NDB9 673 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 UNCXA6NJT0 531 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 F5H6K3 240 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 KIF3CO14782 793 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 CTDNEP1O95476 244 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 SNHG28P0DPA3 235 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 PTPRAP18433 802 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 KIF5BP33176 963 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 FMR1Q06787 632 aaKnown RBP eCLIP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 KLRC3Q07444 240 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 TTLL12Q14166 644 aaPredicted RBP9.35□□□□□ -0.91
CPNE3-209ENST00000620393 GRM4Q14833 912 aa9.35□□□□□ -0.91
CPNE3-209ENST00000620393 NTRK3Q16288 839 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms