RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HPS5Q9UPZ3 1129 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 H0YHG0 523 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 PSMD14O00487 310 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 PRC1O43663 620 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 RPS6KA4O75676 772 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 FSBPO95073 299 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 IMMTQ16891 758 aaKnown RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 TRAPPC3LQ5T215 181 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 SPATA1Q5VX52 437 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 EHBP1Q8NDI1 1231 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 ALG1Q9BT22 464 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 SAMSN1Q9NSI8 373 aaKnown RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 GNL3LQ9NVN8 582 aaKnown RBP12.19□□□□□ -0.46
UPF3A-212ENST00000619079 PAG1Q9NWQ8 432 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 C4BP0C0L5 1744 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 TJP1Q07157 1748 aa12.19□□□□□ -0.46
UPF3A-212ENST00000619079 OPA1O60313 960 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 RFC4P35249 363 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 SATB1Q01826 763 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 AIMP1Q12904 312 aaKnown RBP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 TRIM29Q14134 588 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 PROSER3Q2NL68 480 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 NCAPH2Q6IBW4 605 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 TRMT44Q8IYL2 757 aaKnown RBP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 CEP120Q8N960 986 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 DBNDD2Q9BQY9 259 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 ADD3Q9UEY8 706 aaKnown RBP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 RREB1Q92766 1687 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 TMCO5BA8MYB1 307 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 NBPF26B4DH59 902 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 CHUKO15111 745 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 IL6STP40189 918 aaPredicted RBP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 NBPF10Q6P3W6 841 aaKnown RBP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 AMIGO3Q86WK7 504 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 NBPF15Q8N660 670 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 CPLX3Q8WVH0 158 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 SELENOOQ9BVL4 669 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 DDX21Q9NR30 783 aaKnown RBP eCLIP12.18□□□□□ -0.46
UPF3A-212ENST00000619079 NUP188Q5SRE5 1749 aa12.18□□□□□ -0.46
UPF3A-212ENST00000619079 MAST3O60307 1309 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 ZMYM6O95789 1325 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 GPTP24298 496 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 CASP14P31944 242 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 SKIDA1Q1XH10 827 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 KRT40Q6A162 431 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 APTXQ7Z2E3 356 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 YTHDF3Q7Z739 585 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 RALYLQ86SE5 291 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 OTUD6BQ8N6M0 293 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 ACRBPQ8NEB7 543 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 HAUS4Q9H6D7 363 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 FAM184BQ9ULE4 1060 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 SAR1BQ9Y6B6 198 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 NDUFB9Q9Y6M9 179 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 SYNRGQ9UMZ2 1314 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 ZNF831Q5JPB2 1677 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 A0A0U1RQJ8 604 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 GOLIM4O00461 696 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 RNF113AO15541 343 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 TEX33O43247 280 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 CHGBP05060 677 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 PRR29P0C7W0 189 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 CALRP27797 417 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 GNGT1P63211 74 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 PTPN12Q05209 780 aaKnown RBP12.17□□□□□ -0.46
UPF3A-212ENST00000619079 GCKRQ14397 625 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 SLC9C2Q5TAH2 1124 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 UBE3BQ7Z3V4 1068 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 RIC3Q7Z5B4 369 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 FLAD1Q8NFF5 587 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 NCOA7Q8NI08 942 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 ATRIPQ8WXE1 791 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 TBC1D2BQ9UPU7 963 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 CAPN7Q9Y6W3 813 aa12.17□□□□□ -0.46
UPF3A-212ENST00000619079 GRIN2DO15399 1336 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 SRCAPQ6ZRS2 3230 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 NEURL1BA8MQ27 555 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 AGPSO00116 658 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ZEB2O60315 1214 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ZPR1O75312 459 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 GYPCP04921 128 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 RFX5P48382 616 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 PLCB4Q15147 1175 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 CDKAL1Q5VV42 579 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 CCNI2Q6ZMN8 369 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 MB21D2Q8IYB1 491 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ZNF579Q8NAF0 562 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 SPATA20Q8TB22 786 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ARHGEF1Q92888 912 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 SH3GL2Q99962 352 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 GJB4Q9NTQ9 266 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ABHD10Q9NUJ1 306 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 TAF1LQ8IZX4 1826 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 PNPLA7Q6ZV29 1317 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 NDUFAB1O14561 156 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 MEFVO15553 781 aaPredicted RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 TFRCP02786 760 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 IGKV5-2P06315 115 aa12.16□□□□□ -0.46
UPF3A-212ENST00000619079 EPB41P11171 864 aaKnown RBP12.16□□□□□ -0.46
UPF3A-212ENST00000619079 ADRA2BP18089 450 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms