RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 RPAP3Q9H6T3 665 aaPredicted RBP13.78□□□□□ -0.2
LINC00539-204ENST00000608957 TAOK2Q9UL54 1235 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 FRMPD3Q5JV73 1810 aa13.78□□□□□ -0.2
LINC00539-204ENST00000608957 SPDYE16A6NNV3 312 aaPredicted RBP13.77□□□□□ -0.21
LINC00539-204ENST00000608957 ADCY3O60266 1144 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 RASA1P20936 1047 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 ICA1Q05084 483 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 IFNL3Q8IZI9 196 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 SLAIN1Q8ND83 568 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 COA7Q96BR5 231 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 ALPK3Q96L96 1907 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 CCDC17Q96LX7 622 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 PAGR1Q9BTK6 254 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 BTBD7Q9P203 1132 aa13.77□□□□□ -0.21
LINC00539-204ENST00000608957 MINDY4BA8MYZ0 360 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 PATL2C9JE40 543 aaKnown RBP13.76□□□□□ -0.21
LINC00539-204ENST00000608957 CCL5P13501 91 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 LBX2Q6XYB7 198 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 AMOTL1Q8IY63 956 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 GPRC5AQ8NFJ5 357 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 DDRGK1Q96HY6 314 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 TMEM106CQ9BVX2 250 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 TMX2Q9Y320 296 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 TACC3Q9Y6A5 838 aa13.76□□□□□ -0.21
LINC00539-204ENST00000608957 CDC45O75419 566 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 INHAP05111 366 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 EEF2P13639 858 aaKnown RBP13.75□□□□□ -0.21
LINC00539-204ENST00000608957 GNAT2P19087 354 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 SDSP20132 328 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 TRIM32Q13049 653 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 PXYLP1Q8TE99 480 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 EVI5LQ96CN4 794 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 UNC93B1Q9H1C4 597 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 VCPKMTQ9H867 229 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 RABGAP1Q9Y3P9 1069 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 ZNF236Q9UL36 1845 aa13.75□□□□□ -0.21
LINC00539-204ENST00000608957 PLXNA1Q9UIW2 1896 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 LAMA4Q16363 1823 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 IGKV6D-41A0A0C4DH26 115 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 A0A0D9SFI3 127 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 TDO2P48775 406 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 LRRFIP1Q32MZ4 808 aaKnown RBP13.74□□□□□ -0.21
LINC00539-204ENST00000608957 VPS53Q5VIR6 699 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 GPR142Q7Z601 462 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 SPICE1Q8N0Z3 855 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 GTF3C2Q8WUA4 911 aaPredicted RBP13.74□□□□□ -0.21
LINC00539-204ENST00000608957 USP6NLQ92738 828 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 FAM227BQ96M60 508 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 ARHGEF10LQ9HCE6 1279 aa13.74□□□□□ -0.21
LINC00539-204ENST00000608957 BIN2Q9UBW5 565 aaPredicted RBP13.74□□□□□ -0.21
LINC00539-204ENST00000608957 PRDM1O75626 825 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 APPP05067 770 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 UBXN2AP68543 259 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 MORN1Q5T089 497 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 TRIB2Q92519 343 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 RNF208Q9H0X6 261 aa13.73□□□□□ -0.21
LINC00539-204ENST00000608957 TRIM6-TRIM34B2RNG4 842 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 GJB1P08034 283 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 CYP2B6P20813 491 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 MAPK4P31152 587 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 DSG3P32926 999 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 GJA8P48165 433 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 ATP2B2Q01814 1243 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 PPARAQ07869 468 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 COG2Q14746 738 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 ZNF589Q86UQ0 364 aaPredicted RBP13.72□□□□□ -0.21
LINC00539-204ENST00000608957 ATG4CQ96DT6 458 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 TANGO6Q9C0B7 1094 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 KANSL2Q9H9L4 492 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 MKNK2Q9HBH9 465 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 INCENPQ9NQS7 918 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 FBXO28Q9NVF7 368 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 SMCHD1A6NHR9 2005 aa13.72□□□□□ -0.21
LINC00539-204ENST00000608957 WDR46O15213 610 aaKnown RBP13.71□□□□□ -0.21
LINC00539-204ENST00000608957 CTDSPL2Q05D32 466 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 NMIQ13287 307 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-204ENST00000608957 CCL14Q16627 93 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 CASC1Q6TDU7 716 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 PLEKHH3Q7Z736 793 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 UBE2Q1Q7Z7E8 422 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 LPAR1Q92633 364 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 RILPL2Q969X0 211 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 NUDT12Q9BQG2 462 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 NAPBQ9H115 298 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 PAK6Q9NQU5 681 aaPredicted RBP13.71□□□□□ -0.21
LINC00539-204ENST00000608957 HELLSQ9NRZ9 838 aa13.71□□□□□ -0.21
LINC00539-204ENST00000608957 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.71□□□□□ -0.21
LINC00539-204ENST00000608957 PLIN4Q96Q06 1357 aa13.71□□□□□ -0.22
LINC00539-204ENST00000608957 HMGCRP04035 888 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 FAM47AQ5JRC9 791 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 U2AF1L4Q8WU68 220 aaKnown RBP13.7□□□□□ -0.22
LINC00539-204ENST00000608957 SOCS4Q8WXH5 440 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 CEP95Q96GE4 821 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 NUP88Q99567 741 aaPredicted RBP13.7□□□□□ -0.22
LINC00539-204ENST00000608957 MOV10L1Q9BXT6 1211 aaKnown RBP13.7□□□□□ -0.22
LINC00539-204ENST00000608957 SH2D4AQ9H788 454 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 NYAP2Q9P242 653 aa13.7□□□□□ -0.22
LINC00539-204ENST00000608957 RBM19Q9Y4C8 960 aaKnown RBP13.7□□□□□ -0.22
LINC00539-204ENST00000608957 EIF5BO60841 1220 aaKnown RBP13.69□□□□□ -0.22
LINC00539-204ENST00000608957 FLOT1O75955 427 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms