RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 ZMYND8Q9ULU4 1186 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-228ENST00000602239 PFASO15067 1338 aa19■□□□□ 0.63
SHKBP1-228ENST00000602239 USP17L12C9JPN9 530 aa19■□□□□ 0.63
SHKBP1-228ENST00000602239 USP17L21D6R901 530 aa19■□□□□ 0.63
SHKBP1-228ENST00000602239 AKR1B1P15121 316 aa19■□□□□ 0.63
SHKBP1-228ENST00000602239 ATP8A2Q9NTI2 1148 aa19■□□□□ 0.63
SHKBP1-228ENST00000602239 LAMA3Q16787 3333 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 GLRX3O76003 335 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 SYN1P17600 705 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 GRB14Q14449 540 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 C12orf60Q5U649 245 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 TMEM179Q6ZVK1 233 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 MOV10L1Q9BXT6 1211 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 LRRCC1Q9C099 1032 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 CHMP4BQ9H444 224 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 HOXC10Q9NYD6 342 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 SWAP70Q9UH65 585 aa18.99■□□□□ 0.63
SHKBP1-228ENST00000602239 SOX1O00570 391 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 COL6A1P12109 1028 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 CDK8P49336 464 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 SPICE1Q8N0Z3 855 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 GDF15Q99988 308 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 TANGO6Q9C0B7 1094 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 PUS7LQ9H0K6 701 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 IVNS1ABPQ9Y6Y0 642 aa18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 BAZ2AQ9UIF9 1905 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-228ENST00000602239 HOXC6P09630 235 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 CYP2C19P33261 490 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 ATP2B2Q01814 1243 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 UBE3CQ15386 1083 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 MFSD14CQ5VZR4 134 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 SPATC1LQ9H0A9 340 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 TMX2Q9Y320 296 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 SLC4A4Q9Y6R1 1079 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 DNAH12Q6ZR08 3092 aa18.97■□□□□ 0.63
SHKBP1-228ENST00000602239 RLFQ13129 1914 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 IGHA2P01877 340 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 ICA1Q05084 483 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 CTR9Q6PD62 1173 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 TRPV1Q8NER1 839 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 LRCH3Q96II8 777 aa18.96■□□□□ 0.63
SHKBP1-228ENST00000602239 A0A1W2PPC1 479 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 ERCC3P19447 782 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 ADORA2AP29274 412 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 CNGA1P29973 690 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 DSG3P32926 999 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 BMP8BP34820 402 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 LRRC26Q2I0M4 334 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 C16orf86Q6ZW13 317 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 ATG4CQ96DT6 458 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 CCDC17Q96LX7 622 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 VCPKMTQ9H867 229 aa18.95■□□□□ 0.62
SHKBP1-228ENST00000602239 COBLO75128 1261 aa18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 FLOT1O75955 427 aa18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 EEF2P13639 858 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 MAGEA10P43363 369 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 SAMD1Q6SPF0 538 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 DPP9Q86TI2 863 aa18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 LPAR1Q92633 364 aa18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 ARHGEF10LQ9HCE6 1279 aa18.94■□□□□ 0.62
SHKBP1-228ENST00000602239 STRNO43815 780 aa18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 PLS1Q14651 629 aa18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 TSHZ3Q63HK5 1081 aa18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 STRBPQ96SI9 672 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 ECHDC1Q9NTX5 307 aa18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 FBXO28Q9NVF7 368 aa18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 DDX20Q9UHI6 824 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-228ENST00000602239 ZSCAN25Q6NSZ9 544 aa18.92■□□□□ 0.62
SHKBP1-228ENST00000602239 STK11IPQ8N1F8 1099 aa18.92■□□□□ 0.62
SHKBP1-228ENST00000602239 SHCBP1Q8NEM2 672 aa18.92■□□□□ 0.62
SHKBP1-228ENST00000602239 SENP6Q9GZR1 1112 aaPredicted RBP18.92■□□□□ 0.62
SHKBP1-228ENST00000602239 DCTPP1Q9H773 170 aa18.92■□□□□ 0.62
SHKBP1-228ENST00000602239 GSG1L2A8MUP6 293 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 CYBAP13498 195 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 TMEM132BQ14DG7 1078 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 PRAMEF19Q5SWL8 479 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 NCAPG2Q86XI2 1143 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 AMOTL1Q8IY63 956 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 MB21D1Q8N884 522 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 OSBP2Q969R2 916 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 DDRGK1Q96HY6 314 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 SH2D4AQ9H788 454 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 KANSL2Q9H9L4 492 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 MYH8P13535 1937 aa18.91■□□□□ 0.62
SHKBP1-228ENST00000602239 MYH7P12883 1935 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 WDR46O15213 610 aaKnown RBP18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 ANO1Q5XXA6 986 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 OLFML2BQ68BL8 750 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 KBTBD3Q8NAB2 608 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 MROH8Q9H579 483 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 ADAMTS5Q9UNA0 930 aa18.9■□□□□ 0.62
SHKBP1-228ENST00000602239 A0A0G2JMZ2 1700 aa18.89■□□□□ 0.61
SHKBP1-228ENST00000602239 ATN1P54259 1190 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-228ENST00000602239 FRMPD3Q5JV73 1810 aa18.88■□□□□ 0.61
SHKBP1-228ENST00000602239 RAD21O60216 631 aa18.88■□□□□ 0.61
SHKBP1-228ENST00000602239 MSCO60682 206 aa18.88■□□□□ 0.61
SHKBP1-228ENST00000602239 SBK1Q52WX2 424 aa18.88■□□□□ 0.61
SHKBP1-228ENST00000602239 GJC2Q5T442 439 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms