RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 P2RX7Q99572 595 aaKnown RBP17.8■□□□□ 0.44
UPF1-202ENST00000594243 IL25Q9H293 177 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 EFCC1Q9HA90 598 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 INCENPQ9NQS7 918 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 MTMR4Q9NYA4 1195 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 CLIP2Q9UDT6 1046 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 TRIM17Q9Y577 477 aa17.8■□□□□ 0.44
UPF1-202ENST00000594243 TTLL1O95922 423 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 GNRH1P01148 92 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 CASC1Q6TDU7 716 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 KIAA1211Q6ZU35 1233 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 ANKRD13CQ8N6S4 541 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 STAG1Q8WVM7 1258 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 MKL1Q969V6 931 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 CEP95Q96GE4 821 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 MCOLN1Q9GZU1 580 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 RPAP3Q9H6T3 665 aaPredicted RBP17.79■□□□□ 0.44
UPF1-202ENST00000594243 SYNPO2Q9UMS6 1093 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 PLIN4Q96Q06 1357 aa17.79■□□□□ 0.44
UPF1-202ENST00000594243 HERVK_113P62684 666 aa17.78■□□□□ 0.44
UPF1-202ENST00000594243 FAM110CQ1W6H9 321 aa17.78■□□□□ 0.44
UPF1-202ENST00000594243 RRP12Q5JTH9 1297 aaKnown RBP17.78■□□□□ 0.44
UPF1-202ENST00000594243 OTOP1Q7RTM1 612 aa17.78■□□□□ 0.44
UPF1-202ENST00000594243 HOXC10Q9NYD6 342 aa17.78■□□□□ 0.44
UPF1-202ENST00000594243 WDR46O15213 610 aaKnown RBP17.77■□□□□ 0.44
UPF1-202ENST00000594243 HOXD10P28358 340 aa17.77■□□□□ 0.44
UPF1-202ENST00000594243 PSMC4P43686 418 aa17.77■□□□□ 0.44
UPF1-202ENST00000594243 COG2Q14746 738 aa17.77■□□□□ 0.44
UPF1-202ENST00000594243 ABHD8Q96I13 439 aa17.77■□□□□ 0.44
UPF1-202ENST00000594243 TACC3Q9Y6A5 838 aa17.77■□□□□ 0.44
UPF1-202ENST00000594243 U3KPZ7 1027 aaPredicted RBP17.77■□□□□ 0.44
UPF1-202ENST00000594243 F5H6K3 240 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 RAD21O60216 631 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 FMNL1O95466 1100 aaPredicted RBP17.76■□□□□ 0.43
UPF1-202ENST00000594243 FCGRTP55899 365 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 KLRC3Q07444 240 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 KIAA1755Q5JYT7 1200 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 FBXO46Q6PJ61 603 aaPredicted RBP17.76■□□□□ 0.43
UPF1-202ENST00000594243 SPICE1Q8N0Z3 855 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 ESR2Q92731 530 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 ESYT1Q9BSJ8 1104 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 TANGO6Q9C0B7 1094 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 NBPF3Q9H094 633 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 TCP11L1Q9NUJ3 509 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 MORF4L1Q9UBU8 362 aa17.76■□□□□ 0.43
UPF1-202ENST00000594243 GREB1LQ9C091 1923 aaPredicted RBP17.75■□□□□ 0.43
UPF1-202ENST00000594243 CDC45O75419 566 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 PRMT2P55345 433 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 PTH1RQ03431 593 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 LBX2Q6XYB7 198 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 TBC1D10CQ8IV04 446 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 GPRC5AQ8NFJ5 357 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 MAP4K1Q92918 833 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 CNNM2Q9H8M5 875 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 IL17RBQ9NRM6 502 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 RBPJLQ9UBG7 517 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 STX8Q9UNK0 236 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 PTPN22Q9Y2R2 807 aa17.75■□□□□ 0.43
UPF1-202ENST00000594243 TTC14Q96N46 770 aa17.74■□□□□ 0.43
UPF1-202ENST00000594243 KRT23Q9C075 422 aa17.74■□□□□ 0.43
UPF1-202ENST00000594243 ARHGAP39Q9C0H5 1083 aa17.74■□□□□ 0.43
UPF1-202ENST00000594243 RABGAP1Q9Y3P9 1069 aa17.74■□□□□ 0.43
UPF1-202ENST00000594243 MYPNQ86TC9 1320 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 FLOT1O75955 427 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 ECM2O94769 699 aaPredicted RBP17.73■□□□□ 0.43
UPF1-202ENST00000594243 NOVP48745 357 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 CAP1Q01518 475 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 CCDC178Q5BJE1 867 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 GMCL1P1Q8NEA9 526 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 TRIM47Q96LD4 638 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 PAGR1Q9BTK6 254 aa17.73■□□□□ 0.43
UPF1-202ENST00000594243 SPDYE16A6NNV3 312 aaPredicted RBP17.72■□□□□ 0.43
UPF1-202ENST00000594243 TNPO2O14787 897 aaKnown RBP17.72■□□□□ 0.43
UPF1-202ENST00000594243 NMT2O60551 498 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 NDUFB10O96000 172 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 CTGFP29279 349 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 DSG3P32926 999 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 ERVK-9P63128 1117 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 ERVK-24P63145 666 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 TRDNQ13061 729 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 FAM83BQ5T0W9 1011 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 IQCA1Q86XH1 822 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 CCAR1Q8IX12 1150 aaKnown RBP17.72■□□□□ 0.43
UPF1-202ENST00000594243 COA7Q96BR5 231 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 TXNRD2Q9NNW7 524 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 SRRDQ9UH36 339 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 NEDD4P46934 1319 aa17.72■□□□□ 0.43
UPF1-202ENST00000594243 KDM4AO75164 1064 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 CYP21A2P08686 494 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 CCNA1P78396 465 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 Q3C1V9 767 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 SLFN13Q68D06 897 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 LRRC47Q8N1G4 583 aaKnown RBP17.71■□□□□ 0.43
UPF1-202ENST00000594243 MB21D1Q8N884 522 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 LSG1Q9H089 658 aaKnown RBP17.71■□□□□ 0.43
UPF1-202ENST00000594243 ANO2Q9NQ90 1003 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 HPS5Q9UPZ3 1129 aa17.71■□□□□ 0.43
UPF1-202ENST00000594243 RBM8AQ9Y5S9 174 aaKnown RBP17.71■□□□□ 0.43
UPF1-202ENST00000594243 CCDC85CA6NKD9 419 aa17.7■□□□□ 0.42
UPF1-202ENST00000594243 B4E1Z4 1266 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms