RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 COG2Q14746 738 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 Q3C1V9 767 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 LBX2Q6XYB7 198 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 TICAM2Q86XR7 235 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 NKX2-3Q8TAU0 364 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 RNF208Q9H0X6 261 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 NAPBQ9H115 298 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 VCPKMTQ9H867 229 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 CWC22Q9HCG8 908 aaKnown RBP18.23■□□□□ 0.51
TRIM28-203ENST00000593582 HOXC10Q9NYD6 342 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 GJD2Q9UKL4 321 aa18.23■□□□□ 0.51
TRIM28-203ENST00000593582 INHAP05111 366 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 EEF2P13639 858 aaKnown RBP18.22■□□□□ 0.51
TRIM28-203ENST00000593582 RASA1P20936 1047 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 POTEEQ6S8J3 1075 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 SPICE1Q8N0Z3 855 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 SOCS4Q8WXH5 440 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 NUDT12Q9BQG2 462 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 PORCNQ9H237 461 aa18.22■□□□□ 0.51
TRIM28-203ENST00000593582 SPDYE16A6NNV3 312 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-203ENST00000593582 TRIM6-TRIM34B2RNG4 842 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 CNMDO75829 334 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 GJB1P08034 283 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 SLC3A2P08195 630 aaKnown RBP18.21■□□□□ 0.51
TRIM28-203ENST00000593582 KIAA1755Q5JYT7 1200 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 ZNF444Q8N0Y2 327 aaPredicted RBP18.21■□□□□ 0.51
TRIM28-203ENST00000593582 GOPCQ9HD26 462 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 MYH8P13535 1937 aa18.21■□□□□ 0.51
TRIM28-203ENST00000593582 FLOT1O75955 427 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 HMGCRP04035 888 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 PDE4BQ07343 736 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 CCDC129Q6ZRS4 1044 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 GPR142Q7Z601 462 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 PLEKHH3Q7Z736 793 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.2■□□□□ 0.5
TRIM28-203ENST00000593582 UNC93B1Q9H1C4 597 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 HELLSQ9NRZ9 838 aa18.2■□□□□ 0.5
TRIM28-203ENST00000593582 WDR46O15213 610 aaKnown RBP18.19■□□□□ 0.5
TRIM28-203ENST00000593582 PRDM1O75626 825 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 XRCC5P13010 732 aaKnown RBP18.19■□□□□ 0.5
TRIM28-203ENST00000593582 CYP2B6P20813 491 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 GJA8P48165 433 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 WDR78Q5VTH9 848 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 PLEKHM2Q8IWE5 1019 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 RILPL2Q969X0 211 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 BTBD7Q9P203 1132 aa18.19■□□□□ 0.5
TRIM28-203ENST00000593582 RAD21O60216 631 aa18.18■□□□□ 0.5
TRIM28-203ENST00000593582 PPARAQ07869 468 aa18.18■□□□□ 0.5
TRIM28-203ENST00000593582 MB21D1Q8N884 522 aa18.18■□□□□ 0.5
TRIM28-203ENST00000593582 U2AF1L4Q8WU68 220 aaKnown RBP18.18■□□□□ 0.5
TRIM28-203ENST00000593582 OSBPL3Q9H4L5 887 aa18.18■□□□□ 0.5
TRIM28-203ENST00000593582 IVNS1ABPQ9Y6Y0 642 aa18.18■□□□□ 0.5
TRIM28-203ENST00000593582 DSG3P32926 999 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 RGS2P41220 211 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 IRX6P78412 446 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-203ENST00000593582 MCMDC2Q4G0Z9 681 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 MORN1Q5T089 497 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 TRMT44Q8IYL2 757 aaKnown RBP18.17■□□□□ 0.5
TRIM28-203ENST00000593582 SHISA4Q96DD7 197 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 FAM227BQ96M60 508 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 NYAP2Q9P242 653 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 PDE4DIPQ5VU43 2346 aa18.17■□□□□ 0.5
TRIM28-203ENST00000593582 DOCK3Q8IZD9 2030 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 A0A0D9SFI3 127 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 TSPY3P0CV98 308 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 TSPY8P0CW00 308 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 PRPF38BQ5VTL8 546 aaKnown RBP18.16■□□□□ 0.5
TRIM28-203ENST00000593582 SAMD1Q6SPF0 538 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-203ENST00000593582 USP6NLQ92738 828 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 DEFB118Q96PH6 123 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 SPATC1LQ9H0A9 340 aa18.16■□□□□ 0.5
TRIM28-203ENST00000593582 PAK6Q9NQU5 681 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-203ENST00000593582 IGKV6D-41A0A0C4DH26 115 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 SLC15A5A6NIM6 579 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 FOXP2O15409 715 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 SGPL1O95470 568 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 ZKSCAN1P17029 563 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-203ENST00000593582 CAPN2P17655 700 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 NMIQ13287 307 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-203ENST00000593582 PLS1Q14651 629 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 VPS53Q5VIR6 699 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 TRIB2Q92519 343 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 ATG4CQ96DT6 458 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 CEP95Q96GE4 821 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 APBA2Q99767 749 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 MOV10L1Q9BXT6 1211 aaKnown RBP18.15■□□□□ 0.5
TRIM28-203ENST00000593582 HMX1Q9NP08 348 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-203ENST00000593582 CLIP2Q9UDT6 1046 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 RPTORQ8N122 1335 aa18.15■□□□□ 0.5
TRIM28-203ENST00000593582 F5H6K3 240 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 TTLL1O95922 423 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 TFRCP02786 760 aaKnown RBP18.14■□□□□ 0.49
TRIM28-203ENST00000593582 PTPREP23469 700 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 TFAP4Q01664 338 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 KLRC3Q07444 240 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 MAP2K5Q13163 448 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 ALX1Q15699 326 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 FAM83BQ5T0W9 1011 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 NEDD1Q8NHV4 660 aa18.14■□□□□ 0.49
TRIM28-203ENST00000593582 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms