RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS4B-207ENST00000591519 PRO3102Q9H379 93 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 IL1RAPL2Q9NP60 686 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 DDX19BQ9UMR2 479 aa12.63□□□□□ -0.39
VPS4B-207ENST00000591519 PLXNB2O15031 1838 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 MAGEB6P1A0A0J9YX57 407 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 RAB11FIP3O75154 756 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 HMMRO75330 724 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 MAPK4P31152 587 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 PLCD1P51178 756 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 ERVK-9P63128 1117 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 ERVK-24P63145 666 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 FOXK1P85037 733 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 CERKLQ49MI3 558 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-207ENST00000591519 SLC9C2Q5TAH2 1124 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 MAP3K21Q5TCX8 1036 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 TRMT44Q8IYL2 757 aaKnown RBP12.62□□□□□ -0.39
VPS4B-207ENST00000591519 NUDT12Q9BQG2 462 aa12.62□□□□□ -0.39
VPS4B-207ENST00000591519 HMX1Q9NP08 348 aaPredicted RBP12.62□□□□□ -0.39
VPS4B-207ENST00000591519 TCRBV5S4A2TA0A5A2 114 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L15C9J2P7 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L13C9JLJ4 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L11C9JVI0 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L18D6R9N7 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L22D6RA61 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L17D6RBQ6 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L19D6RCP7 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L20D6RJB6 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 PEX10O60683 326 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 PDE6AP16499 860 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 GUCY1A2P33402 732 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 SHMT1P34896 483 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP14P54578 494 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 USP17L24Q0WX57 530 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 ABCB5Q2M3G0 1257 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 MORN1Q5T089 497 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 LBX2Q6XYB7 198 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 CATSPERGQ6ZRH7 1159 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 PTCD2Q8WV60 388 aaKnown RBP12.61□□□□□ -0.39
VPS4B-207ENST00000591519 SOCS4Q8WXH5 440 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 TRIB2Q92519 343 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 CHMP4BQ9H444 224 aaKnown RBP12.61□□□□□ -0.39
VPS4B-207ENST00000591519 CABP5Q9NP86 173 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 GPHNQ9NQX3 736 aaPredicted RBP12.61□□□□□ -0.39
VPS4B-207ENST00000591519 RBM27Q9P2N5 1060 aaKnown RBP12.61□□□□□ -0.39
VPS4B-207ENST00000591519 RCAN3Q9UKA8 241 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 RABGAP1Q9Y3P9 1069 aa12.61□□□□□ -0.39
VPS4B-207ENST00000591519 IFIT2P09913 472 aaKnown RBP12.6□□□□□ -0.39
VPS4B-207ENST00000591519 CYP2B6P20813 491 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 TRIM32Q13049 653 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 GPR142Q7Z601 462 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 NECAB2Q7Z6G3 386 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 PAWRQ96IZ0 340 aaKnown RBP12.6□□□□□ -0.39
VPS4B-207ENST00000591519 CRNKL1Q9BZJ0 848 aaKnown RBP12.6□□□□□ -0.39
VPS4B-207ENST00000591519 PORCNQ9H237 461 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 OGDHLQ9ULD0 1010 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 COG6Q9Y2V7 657 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 ZNF532Q9HCE3 1301 aa12.6□□□□□ -0.39
VPS4B-207ENST00000591519 TRIOBPQ9H2D6 2365 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 EVI5O60447 810 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 CNMDO75829 334 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 POLR3DP05423 398 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-207ENST00000591519 ATP5JP18859 108 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 RAB3GAP1Q15042 981 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 PLEKHH3Q7Z736 793 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 ACER1Q8TDN7 264 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 DCP1AQ9NPI6 582 aaPredicted RBP12.59□□□□□ -0.39
VPS4B-207ENST00000591519 MCM9Q9NXL9 1143 aa12.59□□□□□ -0.39
VPS4B-207ENST00000591519 A0A1W2PPC1 479 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 GOLIM4O00461 696 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 ARHGAP33O14559 1287 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 VCAM1P19320 739 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 RGS2P41220 211 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 CCNA1P78396 465 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 PDE3AQ14432 1141 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 DIS3LQ8TF46 1054 aaKnown RBP12.58□□□□□ -0.4
VPS4B-207ENST00000591519 FEZ1Q99689 392 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 NBPF3Q9H094 633 aa12.58□□□□□ -0.4
VPS4B-207ENST00000591519 A0A1W2PRG0 241 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 APBB1O00213 710 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 GLRX3O76003 335 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 ADD2P35612 726 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 PSEN2P49810 448 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 CACNB2Q08289 660 aaPredicted RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 MAP2K5Q13163 448 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 SEPT2Q15019 361 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 ZYXQ15942 572 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 ADGRD1Q6QNK2 874 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 CCAR1Q8IX12 1150 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 LCORLQ8N3X6 602 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 EDC3Q96F86 508 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 DNAJC2Q99543 621 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 HAUS7Q99871 368 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 PAGR1Q9BTK6 254 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 ATP8A2Q9NTI2 1148 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 PAG1Q9NWQ8 432 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 HOXC10Q9NYD6 342 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 SWAP70Q9UH65 585 aa12.57□□□□□ -0.4
VPS4B-207ENST00000591519 DDX60LQ5H9U9 1706 aaKnown RBP12.57□□□□□ -0.4
VPS4B-207ENST00000591519 SLC15A5A6NIM6 579 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms