RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 MS4A1P11836 297 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 SYN1P17600 705 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 LRIT3Q3SXY7 679 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 CCAR1Q8IX12 1150 aaKnown RBP14.22□□□□□ -0.13
CLIP3-204ENST00000590559 TRPV1Q8NER1 839 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 CDH23Q9H251 3354 aa14.22□□□□□ -0.13
CLIP3-204ENST00000590559 PLXNA1Q9UIW2 1896 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 SMIM22K7EJ46 135 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 RAB11FIP3O75154 756 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 CYP2D6P10635 497 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 ATP5JP18859 108 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 ADD2P35612 726 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 COG2Q14746 738 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 SLFNL1Q499Z3 407 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 TMEM179Q6ZVK1 233 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 SLC44A5Q8NCS7 719 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 SHCBP1Q8NEM2 672 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 DNAJC2Q99543 621 aaKnown RBP14.21□□□□□ -0.13
CLIP3-204ENST00000590559 MOV10L1Q9BXT6 1211 aaKnown RBP14.21□□□□□ -0.13
CLIP3-204ENST00000590559 ARMT1Q9H993 441 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 ATP8A2Q9NTI2 1148 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 PAG1Q9NWQ8 432 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 HOXC10Q9NYD6 342 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 SWAP70Q9UH65 585 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 DDX19BQ9UMR2 479 aa14.21□□□□□ -0.13
CLIP3-204ENST00000590559 PRUNE2Q8WUY3 3088 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 PRKAB2O43741 272 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 STRNO43815 780 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 HMMRO75330 724 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 IFIT2P09913 472 aaKnown RBP14.2□□□□□ -0.14
CLIP3-204ENST00000590559 CYBAP13498 195 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 MFSD14CQ5VZR4 134 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 OLFML2BQ68BL8 750 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 TDHQ8IZJ6 230 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 LPAR1Q92633 364 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 DYNLL2Q96FJ2 89 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 HAUS7Q99871 368 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 SPATC1LQ9H0A9 340 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 DDX20Q9UHI6 824 aaKnown RBP14.2□□□□□ -0.14
CLIP3-204ENST00000590559 COG6Q9Y2V7 657 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 TMX2Q9Y320 296 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 SMCHD1A6NHR9 2005 aa14.2□□□□□ -0.14
CLIP3-204ENST00000590559 MSCO60682 206 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 CHGBP05060 677 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 DSG3P32926 999 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 CYP2C19P33261 490 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 C12orf60Q5U649 245 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 ADAMTS5Q9UNA0 930 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 IVNS1ABPQ9Y6Y0 642 aa14.19□□□□□ -0.14
CLIP3-204ENST00000590559 VCANP13611 3396 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 MPHOSPH10O00566 681 aaKnown RBP14.18□□□□□ -0.14
CLIP3-204ENST00000590559 COBLO75128 1261 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 MBD4O95243 580 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 AKR1B1P15121 316 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 ADORA2AP29274 412 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 ATP2B2Q01814 1243 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 UBE3CQ15386 1083 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 WDR78Q5VTH9 848 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 DIEXFQ68CQ4 756 aaKnown RBP14.18□□□□□ -0.14
CLIP3-204ENST00000590559 C16orf86Q6ZW13 317 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 CLEC10AQ8IUN9 316 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 MB21D1Q8N884 522 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 BOLA2Q9H3K6 86 aa14.18□□□□□ -0.14
CLIP3-204ENST00000590559 CWC22Q9HCG8 908 aaKnown RBP14.18□□□□□ -0.14
CLIP3-204ENST00000590559 CYP2D7A0A087X1C5 515 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 APBB1O00213 710 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 DNM1LO00429 736 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 ERCC3P19447 782 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 CDK8P49336 464 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 ABRAQ8N0Z2 381 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 CCDC17Q96LX7 622 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 SENP6Q9GZR1 1112 aaPredicted RBP14.17□□□□□ -0.14
CLIP3-204ENST00000590559 VCPKMTQ9H867 229 aa14.17□□□□□ -0.14
CLIP3-204ENST00000590559 USP17L12C9JPN9 530 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 USP17L21D6R901 530 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 WDR46O15213 610 aaKnown RBP14.16□□□□□ -0.14
CLIP3-204ENST00000590559 ICA1Q05084 483 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 ATG4CQ96DT6 458 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 TANGO6Q9C0B7 1094 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 UBE2OQ9C0C9 1292 aaKnown RBP14.16□□□□□ -0.14
CLIP3-204ENST00000590559 MROH8Q9H579 483 aa14.16□□□□□ -0.14
CLIP3-204ENST00000590559 SPTBN5Q9NRC6 3674 aaKnown RBP14.16□□□□□ -0.14
CLIP3-204ENST00000590559 MYH4Q9Y623 1939 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 SEPT4O43236 478 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 TMEM132BQ14DG7 1078 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 CTR9Q6PD62 1173 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 DPP9Q86TI2 863 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLIP3-204ENST00000590559 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.15□□□□□ -0.14
CLIP3-204ENST00000590559 PUS7LQ9H0K6 701 aaKnown RBP14.15□□□□□ -0.14
CLIP3-204ENST00000590559 ARHGEF10LQ9HCE6 1279 aa14.15□□□□□ -0.14
CLIP3-204ENST00000590559 FLOT1O75955 427 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 EEF2P13639 858 aaKnown RBP14.14□□□□□ -0.15
CLIP3-204ENST00000590559 CNGA1P29973 690 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 MDM2Q00987 491 aaPredicted RBP14.14□□□□□ -0.15
CLIP3-204ENST00000590559 SNX17Q15036 470 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 Q7L0L9 218 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 SPICE1Q8N0Z3 855 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 DEFB123Q8N688 67 aa14.14□□□□□ -0.15
CLIP3-204ENST00000590559 REPS2Q8NFH8 660 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms