RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 GUCY1A2P33402 732 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 SHMT1P34896 483 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 ADCYAP1R1P41586 468 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 USP5P45974 858 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 LRRC41Q15345 812 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 FAM47AQ5JRC9 791 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 C1orf53Q5VUE5 145 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 DIEXFQ68CQ4 756 aaKnown RBP13.49□□□□□ -0.25
VPS4B-202ENST00000588059 FERMT2Q96AC1 680 aa13.49□□□□□ -0.25
VPS4B-202ENST00000588059 STRNO43815 780 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 ERCC3P19447 782 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 ITGB8P26012 769 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 EPHB4P54760 987 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 TLE2Q04725 743 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 SHCBP1Q8NEM2 672 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 SYMPKQ92797 1274 aaKnown RBP13.48□□□□□ -0.25
VPS4B-202ENST00000588059 RNPC3Q96LT9 517 aaKnown RBP13.48□□□□□ -0.25
VPS4B-202ENST00000588059 SPATC1LQ9H0A9 340 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 TNNQ9UQP3 1299 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 MYH8P13535 1937 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 PLXNA1Q9UIW2 1896 aa13.48□□□□□ -0.25
VPS4B-202ENST00000588059 COL11A1P12107 1806 aaPredicted RBP13.48□□□□□ -0.25
VPS4B-202ENST00000588059 MUC3AQ02505 3323 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 IDH1O75874 414 aaKnown RBP13.47□□□□□ -0.25
VPS4B-202ENST00000588059 TRIM27P14373 513 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 COG2Q14746 738 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 SEPT2Q15019 361 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 PRAMEF19Q5SWL8 479 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 TTC6Q86TZ1 520 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 CERS3Q8IU89 383 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 USP38Q8NB14 1042 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 CABP5Q9NP86 173 aa13.47□□□□□ -0.25
VPS4B-202ENST00000588059 TLR7Q9NYK1 1049 aaKnown RBP13.47□□□□□ -0.25
VPS4B-202ENST00000588059 DBNLQ9UJU6 430 aaKnown RBP13.47□□□□□ -0.25
VPS4B-202ENST00000588059 A0A1W2PRG0 241 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 PLCD1P51178 756 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 POLA2Q14181 598 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 MAGEB6Q8N7X4 407 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 MAML3Q96JK9 1138 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 TANGO6Q9C0B7 1094 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 HOXC10Q9NYD6 342 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 PHF24Q9UPV7 400 aa13.46□□□□□ -0.25
VPS4B-202ENST00000588059 KIAA0355O15063 1070 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 CLTBP09497 229 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 GABPAQ06546 454 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 OS9Q13438 667 aaPredicted RBP13.45□□□□□ -0.26
VPS4B-202ENST00000588059 GRIN2CQ14957 1233 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 TJAP1Q5JTD0 557 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 KIAA1755Q5JYT7 1200 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 ABRAQ8N0Z2 381 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 MB21D1Q8N884 522 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 SSH3Q8TE77 659 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 SLC5A4Q9NY91 659 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 TACC3Q9Y6A5 838 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 ROBO3Q96MS0 1386 aa13.45□□□□□ -0.26
VPS4B-202ENST00000588059 DNAJB2P25686 324 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 EVX2Q03828 476 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 NCAPG2Q86XI2 1143 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 MIER1Q8N108 512 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 RIOK1Q9BRS2 568 aaKnown RBP13.44□□□□□ -0.26
VPS4B-202ENST00000588059 MROH8Q9H579 483 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 ANTXR1Q9H6X2 564 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 XPNPEP3Q9NQH7 507 aa13.44□□□□□ -0.26
VPS4B-202ENST00000588059 A0A1W2PQ45 241 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-202ENST00000588059 A0A1W2PQY0 241 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 TNFRSF10AO00220 468 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 SURF6O75683 361 aaKnown RBP13.43□□□□□ -0.26
VPS4B-202ENST00000588059 PGK1P00558 417 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 RARBP10826 455 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 RAG1P15918 1043 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 COL9A1P20849 921 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 DSG3P32926 999 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 FPGSQ05932 587 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 PLS1Q14651 629 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 ATG4CQ96DT6 458 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 CCDC8Q9H0W5 538 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-202ENST00000588059 NRBP1Q9UHY1 535 aa13.43□□□□□ -0.26
VPS4B-202ENST00000588059 MYO9BQ13459 2157 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 MPHOSPH10O00566 681 aaKnown RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 IPO8O15397 1037 aaKnown RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 PQBP1O60828 265 aaKnown RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 FLOT1O75955 427 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 POLR3DP05423 398 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 FCER1AP12319 257 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 MAP3K12Q12852 859 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 TMED8Q6PL24 325 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 RNF180Q86T96 592 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 CLUAP1Q96AJ1 413 aa13.42□□□□□ -0.26
VPS4B-202ENST00000588059 EAF2Q96CJ1 260 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 NOP58Q9Y2X3 529 aaKnown RBP13.42□□□□□ -0.26
VPS4B-202ENST00000588059 BAZ2AQ9UIF9 1905 aaKnown RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 BCAR3O75815 825 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 TAL1P17542 331 aaPredicted RBP13.41□□□□□ -0.26
VPS4B-202ENST00000588059 ATP8B2P98198 1209 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 TMEM132BQ14DG7 1078 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 TMEM179Q6ZVK1 233 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 CLEC10AQ8IUN9 316 aa13.41□□□□□ -0.26
VPS4B-202ENST00000588059 TMEM57Q8N5G2 664 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms