RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 HSCBQ8IWL3 235 aa11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 IGDCC4Q8TDY8 1250 aa11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 IPO9Q96P70 1041 aaKnown RBP11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 TCP11L1Q9NUJ3 509 aa11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 HERC5Q9UII4 1024 aaKnown RBP11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 ATAD5Q96QE3 1844 aa11.62□□□□□ -0.55
SMCHD1-212ENST00000585229 PRDM1O75626 825 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 EPHX2P34913 555 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 LIFRP42702 1097 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 CUL4AQ13619 759 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 RASA3Q14644 834 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 SEC23AQ15436 765 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 SLC4A8Q2Y0W8 1093 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 ANGEL2Q5VTE6 544 aaKnown RBP11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 TATDN1Q6P1N9 297 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 SGMS1Q86VZ5 419 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 SLC44A5Q8NCS7 719 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 NEDD1Q8NHV4 660 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 ZSCAN31Q96LW9 406 aaPredicted RBP11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 TCEANC2Q96MN5 208 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 TMEM39BQ9GZU3 492 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 TAF1DQ9H5J8 278 aaPredicted RBP11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 MKNK2Q9HBH9 465 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 GGA3Q9NZ52 723 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 LIMCH1Q9UPQ0 1083 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 NID2Q14112 1375 aa11.61□□□□□ -0.55
SMCHD1-212ENST00000585229 SSC5DA1L4H1 1573 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 IGKV6D-41A0A0C4DH26 115 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 RANBP6O60518 1105 aaKnown RBP11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 CCDC178Q5BJE1 867 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 RRP12Q5JTH9 1297 aaKnown RBP11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 IQCA1Q86XH1 822 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 ANKS1AQ92625 1134 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 CCDC17Q96LX7 622 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 CSRNP1Q96S65 589 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 LRRC2Q9BYS8 371 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 DEFB129Q9H1M3 183 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 LY9Q9HBG7 655 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 TOMM22Q9NS69 142 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 TPCN1Q9ULQ1 816 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 ANGEL1Q9UNK9 670 aaKnown RBP11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 MYH4Q9Y623 1939 aa11.6□□□□□ -0.55
SMCHD1-212ENST00000585229 DOCK1Q14185 1865 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 RCAN1P53805 252 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 TFAP4Q01664 338 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 CHST3Q7LGC8 479 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 PNMA8AQ86V59 439 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 ZSCAN29Q8IWY8 852 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 ZNF444Q8N0Y2 327 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 STK11IPQ8N1F8 1099 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 BRF1Q92994 677 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 TMX3Q96JJ7 454 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 ZSCAN10Q96SZ4 725 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 SH2B1Q9NRF2 756 aaPredicted RBP11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 IL17RBQ9NRM6 502 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 TNKSO95271 1327 aa11.59□□□□□ -0.55
SMCHD1-212ENST00000585229 OTOFQ9HC10 1997 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 TSPY2A6NKD2 308 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 SMAPO00193 183 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 LARGE1O95461 756 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 TSPY3P0CV98 308 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 TSPY8P0CW00 308 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 SLURP2P0DP57 97 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 AKR1B1P15121 316 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 WTAPQ15007 396 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 SART3Q15020 963 aaKnown RBP11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 TMEM67Q5HYA8 995 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 FAM47AQ5JRC9 791 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 RCSD1Q6JBY9 416 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 DGKHQ86XP1 1220 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 TMTC2Q8N394 836 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 CRACR2BQ8N4Y2 399 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 ENAHQ8N8S7 591 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 ZNF274Q96GC6 653 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 UBAC1Q9BSL1 405 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 SLC24A3Q9HC58 644 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 SEPT9Q9UHD8 586 aaPredicted RBP11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 ADGRG1Q9Y653 693 aa11.58□□□□□ -0.56
SMCHD1-212ENST00000585229 IFIT3O14879 490 aaKnown RBP11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 PFKFB2O60825 505 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 APOBRQ0VD83 1088 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 ST3GAL1Q11201 340 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 ME3Q16798 604 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 APOA5Q6Q788 366 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 HOOK2Q96ED9 719 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 TRIM34Q9BYJ4 488 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 SENP2Q9HC62 589 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 GINM1Q9NU53 330 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 ZNF112Q9UJU3 913 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 BRPF3Q9ULD4 1205 aa11.57□□□□□ -0.56
SMCHD1-212ENST00000585229 PHIPQ8WWQ0 1821 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 ERICH2A1L162 156 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 PHF20L1A8MW92 1017 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 VEGFAP15692 232 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 PDIA3P30101 505 aaKnown RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 GUCY1A2P33402 732 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 FGD1P98174 961 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 RRP1BQ14684 758 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms