RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CCDC129Q6ZRS4 1044 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 CLEC10AQ8IUN9 316 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 ZNF444Q8N0Y2 327 aaPredicted RBP17.69■□□□□ 0.42
SS18-212ENST00000579061 RILPL2Q969X0 211 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.69■□□□□ 0.42
SS18-212ENST00000579061 HOXC10Q9NYD6 342 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 PLXNB2O15031 1838 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 PARP14Q460N5 1801 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 POTEFA5A3E0 1075 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 SPDYE16A6NNV3 312 aaPredicted RBP17.68■□□□□ 0.42
SS18-212ENST00000579061 WDR46O15213 610 aaKnown RBP17.68■□□□□ 0.42
SS18-212ENST00000579061 FOXP2O15409 715 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 ADCY3O60266 1144 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 UBXN2AP68543 259 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 CCNA1P78396 465 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 PPARAQ07869 468 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 COG2Q14746 738 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 POTEEQ6S8J3 1075 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 FAM227BQ96M60 508 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 PAGR1Q9BTK6 254 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 NYAP2Q9P242 653 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 GJD2Q9UKL4 321 aa17.68■□□□□ 0.42
SS18-212ENST00000579061 IGKV6D-41A0A0C4DH26 115 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 A0A0D9SFI3 127 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 CNMDO75829 334 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 Q3C1V9 767 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 KIAA1755Q5JYT7 1200 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 GOPCQ9HD26 462 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 ANAPC4Q9UJX5 808 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 TNRC18O15417 2968 aaPredicted RBP17.67■□□□□ 0.42
SS18-212ENST00000579061 A0A0G2JMZ2 1700 aa17.67■□□□□ 0.42
SS18-212ENST00000579061 PLIN4Q96Q06 1357 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 PDE4DIPQ5VU43 2346 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 HIP1O00291 1037 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 SDSP20132 328 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 MFAP1P55081 439 aaKnown RBP17.66■□□□□ 0.42
SS18-212ENST00000579061 NMIQ13287 307 aaPredicted RBP17.66■□□□□ 0.42
SS18-212ENST00000579061 STK11IPQ8N1F8 1099 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 MB21D1Q8N884 522 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 SOCS4Q8WXH5 440 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 TANGO6Q9C0B7 1094 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 SYNPO2Q9UMS6 1093 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 ZMYM6O95789 1325 aa17.66■□□□□ 0.42
SS18-212ENST00000579061 PEX10O60683 326 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 DSG3P32926 999 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 ATP2B2Q01814 1243 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 VPS53Q5VIR6 699 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 CCAR1Q8IX12 1150 aaKnown RBP17.65■□□□□ 0.42
SS18-212ENST00000579061 NEDD1Q8NHV4 660 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 MKL1Q969V6 931 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 NUDT12Q9BQG2 462 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 PORCNQ9H237 461 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 BIN2Q9UBW5 565 aaPredicted RBP17.65■□□□□ 0.42
SS18-212ENST00000579061 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.65■□□□□ 0.42
SS18-212ENST00000579061 CCDC171Q6TFL3 1326 aa17.65■□□□□ 0.42
SS18-212ENST00000579061 PRDM1O75626 825 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 HSPD1P10809 573 aaKnown RBP17.64■□□□□ 0.41
SS18-212ENST00000579061 PDE4AP27815 886 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 MTFR1Q15390 333 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 PPP4R3BQ5MIZ7 849 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 GPR142Q7Z601 462 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 PLEKHH3Q7Z736 793 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 ZNF589Q86UQ0 364 aaPredicted RBP17.64■□□□□ 0.41
SS18-212ENST00000579061 SPICE1Q8N0Z3 855 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 NKX2-3Q8TAU0 364 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 MTMR4Q9NYA4 1195 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 BTBD7Q9P203 1132 aa17.64■□□□□ 0.41
SS18-212ENST00000579061 BRCA2P51587 3418 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 FLOT1O75955 427 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 FGAP02671 866 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 FGRP09769 529 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 TSPY3P0CV98 308 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 TSPY8P0CW00 308 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 XRCC5P13010 732 aaKnown RBP17.63■□□□□ 0.41
SS18-212ENST00000579061 CAPN2P17655 700 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 EN2P19622 333 aaPredicted RBP17.63■□□□□ 0.41
SS18-212ENST00000579061 MORN1Q5T089 497 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 USP6NLQ92738 828 aa17.63■□□□□ 0.41
SS18-212ENST00000579061 ORC4O43929 436 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 TTLL1O95922 423 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 HMGCRP04035 888 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 INHAP05111 366 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 GJB1P08034 283 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 CCL5P13501 91 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 ELNP15502 786 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 TFAP4Q01664 338 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 CTDSPL2Q05D32 466 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 TRMT44Q8IYL2 757 aaKnown RBP17.62■□□□□ 0.41
SS18-212ENST00000579061 SHCBP1Q8NEM2 672 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 CEP95Q96GE4 821 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 CWC22Q9HCG8 908 aaKnown RBP17.62■□□□□ 0.41
SS18-212ENST00000579061 DIAPH3Q9NSV4 1193 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 CLIP2Q9UDT6 1046 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 ADAMTS5Q9UNA0 930 aa17.62■□□□□ 0.41
SS18-212ENST00000579061 COL11A1P12107 1806 aaPredicted RBP17.62■□□□□ 0.41
SS18-212ENST00000579061 F5H6K3 240 aa17.61■□□□□ 0.41
SS18-212ENST00000579061 MYCP01106 439 aaPredicted RBP17.61■□□□□ 0.41
SS18-212ENST00000579061 RGS2P41220 211 aa17.61■□□□□ 0.41
SS18-212ENST00000579061 KLRC3Q07444 240 aa17.61■□□□□ 0.41
SS18-212ENST00000579061 TTC22Q5TAA0 569 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms