RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 EXOC6Q8TAG9 804 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 LNPKQ9C0E8 428 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 NAPBQ9H115 298 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 GOPCQ9HD26 462 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 TMX2Q9Y320 296 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 IVNS1ABPQ9Y6Y0 642 aa18.52■□□□□ 0.56
SF3B3-215ENST00000577085 EEF2P13639 858 aaKnown RBP18.51■□□□□ 0.55
SF3B3-215ENST00000577085 GJA8P48165 433 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 PDE1AP54750 535 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 Q3C1V9 767 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 ZMYM1Q5SVZ6 1142 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 SAMD1Q6SPF0 538 aaPredicted RBP18.51■□□□□ 0.55
SF3B3-215ENST00000577085 GPR142Q7Z601 462 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 ZNF444Q8N0Y2 327 aaPredicted RBP18.51■□□□□ 0.55
SF3B3-215ENST00000577085 SEC62Q99442 399 aaKnown RBP18.51■□□□□ 0.55
SF3B3-215ENST00000577085 PORCNQ9H237 461 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 VCPKMTQ9H867 229 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 STAP2Q9UGK3 403 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 GJD2Q9UKL4 321 aa18.51■□□□□ 0.55
SF3B3-215ENST00000577085 SUPT16HQ9Y5B9 1047 aaKnown RBP18.51■□□□□ 0.55
SF3B3-215ENST00000577085 SALL3Q9BXA9 1300 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 SPDYE16A6NNV3 312 aaPredicted RBP18.5■□□□□ 0.55
SF3B3-215ENST00000577085 TRIM6-TRIM34B2RNG4 842 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 FLOT1O75955 427 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 RGS2P41220 211 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 LBX2Q6XYB7 198 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 TRMT44Q8IYL2 757 aaKnown RBP18.5■□□□□ 0.55
SF3B3-215ENST00000577085 IFNL3Q8IZI9 196 aa18.5■□□□□ 0.55
SF3B3-215ENST00000577085 U2AF1L4Q8WU68 220 aaKnown RBP18.5■□□□□ 0.55
SF3B3-215ENST00000577085 WDR46O15213 610 aaKnown RBP18.49■□□□□ 0.55
SF3B3-215ENST00000577085 TFRCP02786 760 aaKnown RBP18.49■□□□□ 0.55
SF3B3-215ENST00000577085 ZKSCAN1P17029 563 aaPredicted RBP18.49■□□□□ 0.55
SF3B3-215ENST00000577085 PDE4BQ07343 736 aa18.49■□□□□ 0.55
SF3B3-215ENST00000577085 DEFB118Q96PH6 123 aa18.49■□□□□ 0.55
SF3B3-215ENST00000577085 EPB41L4AQ9HCS5 686 aaPredicted RBP18.49■□□□□ 0.55
SF3B3-215ENST00000577085 ROBO3Q96MS0 1386 aa18.49■□□□□ 0.55
SF3B3-215ENST00000577085 CNMDO75829 334 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 SGPL1O95470 568 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 XRCC5P13010 732 aaKnown RBP18.48■□□□□ 0.55
SF3B3-215ENST00000577085 RASA1P20936 1047 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 PLS1Q14651 629 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 CHD1LQ86WJ1 897 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 SIAH1Q8IUQ4 282 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 SMC5Q8IY18 1101 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 MB21D1Q8N884 522 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 HMX1Q9NP08 348 aaPredicted RBP18.48■□□□□ 0.55
SF3B3-215ENST00000577085 BTBD7Q9P203 1132 aa18.48■□□□□ 0.55
SF3B3-215ENST00000577085 PRDM1O75626 825 aa18.47■□□□□ 0.55
SF3B3-215ENST00000577085 CAPN2P17655 700 aa18.47■□□□□ 0.55
SF3B3-215ENST00000577085 RILPL2Q969X0 211 aa18.47■□□□□ 0.55
SF3B3-215ENST00000577085 SHISA4Q96DD7 197 aa18.47■□□□□ 0.55
SF3B3-215ENST00000577085 APBA2Q99767 749 aa18.47■□□□□ 0.55
SF3B3-215ENST00000577085 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.47■□□□□ 0.55
SF3B3-215ENST00000577085 KIAA0100Q14667 2235 aaKnown RBP18.46■□□□□ 0.55
SF3B3-215ENST00000577085 MKI67P46013 3256 aaKnown RBP18.46■□□□□ 0.55
SF3B3-215ENST00000577085 IGHDP01880 384 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 TSPY3P0CV98 308 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 TSPY8P0CW00 308 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 PPARAQ07869 468 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 KIAA1755Q5JYT7 1200 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 MORN1Q5T089 497 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 POTEEQ6S8J3 1075 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 CCDC129Q6ZRS4 1044 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 TRIB2Q92519 343 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 HELLSQ9NRZ9 838 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 RPTORQ8N122 1335 aa18.46■□□□□ 0.55
SF3B3-215ENST00000577085 SLC15A5A6NIM6 579 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 FARP2O94887 1054 aaPredicted RBP18.45■□□□□ 0.54
SF3B3-215ENST00000577085 PRKAR2AP13861 404 aaKnown RBP18.45■□□□□ 0.54
SF3B3-215ENST00000577085 DSG3P32926 999 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 NUCB1Q02818 461 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 MAP2K5Q13163 448 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 DPF3Q92784 378 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 HTATIP2Q9BUP3 242 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 SPATC1LQ9H0A9 340 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 PAK6Q9NQU5 681 aaPredicted RBP18.45■□□□□ 0.54
SF3B3-215ENST00000577085 CLIP2Q9UDT6 1046 aa18.45■□□□□ 0.54
SF3B3-215ENST00000577085 PTPREP23469 700 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 MCMDC2Q4G0Z9 681 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 NCAPG2Q86XI2 1143 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 TICAM2Q86XR7 235 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 ATG4CQ96DT6 458 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.44■□□□□ 0.54
SF3B3-215ENST00000577085 MOV10L1Q9BXT6 1211 aaKnown RBP18.44■□□□□ 0.54
SF3B3-215ENST00000577085 NYAP2Q9P242 653 aa18.44■□□□□ 0.54
SF3B3-215ENST00000577085 STRNO43815 780 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 TRIM32Q13049 653 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 FAM83BQ5T0W9 1011 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 MFSD14CQ5VZR4 134 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 DPP9Q86TI2 863 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 MROH8Q9H579 483 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 SLC5A4Q9NY91 659 aa18.43■□□□□ 0.54
SF3B3-215ENST00000577085 ISY1Q9ULR0 285 aaKnown RBP18.43■□□□□ 0.54
SF3B3-215ENST00000577085 CTDP1Q9Y5B0 961 aaPredicted RBP18.43■□□□□ 0.54
SF3B3-215ENST00000577085 DOCK3Q8IZD9 2030 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 F5H6K3 240 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 TTLL1O95922 423 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 ERCC3P19447 782 aa18.42■□□□□ 0.54
SF3B3-215ENST00000577085 MFAP1P55081 439 aaKnown RBP18.42■□□□□ 0.54
SF3B3-215ENST00000577085 TFAP4Q01664 338 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms