RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 ALPK1Q96QP1 1244 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 CTNND2Q9UQB3 1225 aa5.36□□□□□ -1.55
NUP88-209ENST00000574855 CARMIL2Q6F5E8 1435 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 RBAK-RBAKDNI3L0D1 243 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 LRRN2O75325 713 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 ESR1P03372 595 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 SRFP11831 508 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 GDNFP39905 211 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 FANCCQ00597 558 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 LRRFIP1Q32MZ4 808 aaKnown RBP5.35□□□□□ -1.55
NUP88-209ENST00000574855 CDCP2Q5VXM1 449 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 USP48Q86UV5 1035 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 TSPYL5Q86VY4 417 aaPredicted RBP5.35□□□□□ -1.55
NUP88-209ENST00000574855 CREG2Q8IUH2 290 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 RNF34Q969K3 372 aa5.35□□□□□ -1.55
NUP88-209ENST00000574855 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.35□□□□□ -1.55
NUP88-209ENST00000574855 CCDC9Q9Y3X0 531 aaKnown RBP5.35□□□□□ -1.55
NUP88-209ENST00000574855 VAMP1P23763 118 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 RNF4P78317 190 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 CLCQ05315 142 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 RAD51AP2Q09MP3 1159 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 KCNMB1Q16558 191 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 GAB4Q2WGN9 574 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 OGFOD2Q6N063 350 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 ZSWIM9Q86XI8 627 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 SLITRK4Q8IW52 837 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 SYTL4Q96C24 671 aaPredicted RBP5.34□□□□□ -1.55
NUP88-209ENST00000574855 EAF1Q96JC9 268 aaPredicted RBP5.34□□□□□ -1.55
NUP88-209ENST00000574855 ASCC2Q9H1I8 757 aaPredicted RBP5.34□□□□□ -1.55
NUP88-209ENST00000574855 SLAMF8Q9P0V8 285 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 DUSP13Q9UII6 198 aa5.34□□□□□ -1.55
NUP88-209ENST00000574855 WASH4PA8MWX3 477 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 SCAMP3O14828 347 aaKnown RBP5.33□□□□□ -1.56
NUP88-209ENST00000574855 UBOX5O94941 541 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 CCNFP41002 786 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 CLEC16AQ2KHT3 1053 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 OVOS1Q6IE37 1185 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 NLRC3Q7RTR2 1065 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 POU5F2Q8N7G0 328 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 ENOX1Q8TC92 643 aaKnown RBP5.33□□□□□ -1.56
NUP88-209ENST00000574855 VWCEQ96DN2 955 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 ATG4CQ96DT6 458 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 CNNM2Q9H8M5 875 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 FAM53CQ9NYF3 392 aa5.33□□□□□ -1.56
NUP88-209ENST00000574855 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.33□□□□□ -1.56
NUP88-209ENST00000574855 RAC2P15153 192 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 YBX3P16989 372 aaKnown RBP eCLIP5.32□□□□□ -1.56
NUP88-209ENST00000574855 LTKP29376 864 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 EGR3Q06889 387 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 ZNF394Q53GI3 561 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 TMEM67Q5HYA8 995 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 TTC6Q86TZ1 520 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 KIRREL1Q96J84 757 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 C19orf73Q9NVV2 129 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 TMEM59LQ9UK28 342 aa5.32□□□□□ -1.56
NUP88-209ENST00000574855 DNAJC25-GNG10A0A024R161 153 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 CLEC3AO75596 197 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 IMPDH2P12268 514 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 NME1P15531 152 aaKnown RBP5.31□□□□□ -1.56
NUP88-209ENST00000574855 RALGPS1Q5JS13 557 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 FYB2Q5VWT5 728 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 DHX38Q92620 1227 aaKnown RBP5.31□□□□□ -1.56
NUP88-209ENST00000574855 ADAMTS10Q9H324 1103 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 DDX41Q9UJV9 622 aaKnown RBP5.31□□□□□ -1.56
NUP88-209ENST00000574855 PCDHGB7Q9Y5F8 929 aa5.31□□□□□ -1.56
NUP88-209ENST00000574855 ARID1BQ8NFD5 2236 aaPredicted RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 ZNF503-AS2A6NEH8 195 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 LRRC10BA6NIK2 292 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 MEIS3P2A8K0S8 358 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 FARP2O94887 1054 aaPredicted RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 GLI1P08151 1106 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 POLR2BP30876 1174 aaKnown RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 HK2P52789 917 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 RACK1P63244 317 aaKnown RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 NMIQ13287 307 aaPredicted RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 NBPF12Q5TAG4 269 aaPredicted RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 INTS3Q68E01 1043 aaKnown RBP5.3□□□□□ -1.56
NUP88-209ENST00000574855 ZNF654Q8IZM8 581 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 ANTXR1Q9H6X2 564 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 PCDHA11Q9Y5I1 949 aa5.3□□□□□ -1.56
NUP88-209ENST00000574855 SHISA3A0PJX4 238 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 TNFRSF10CO14798 259 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 RECKO95980 971 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 NBPF9Q3BBW0 867 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 MPZL3Q6UWV2 235 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 OXR1Q8N573 874 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 DAGLBQ8NCG7 672 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 ABHD4Q8TB40 342 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 SYTL5Q8TDW5 730 aaPredicted RBP5.29□□□□□ -1.56
NUP88-209ENST00000574855 MYLIPQ8WY64 445 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 MRRFQ96E11 262 aaKnown RBP5.29□□□□□ -1.56
NUP88-209ENST00000574855 DHRS1Q96LJ7 313 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 FERD3LQ96RJ6 166 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 ZNRF3Q9ULT6 936 aa5.29□□□□□ -1.56
NUP88-209ENST00000574855 MLANAQ16655 118 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 FBXW10Q5XX13 1052 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 SPPL2CQ8IUH8 684 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 KSR1Q8IVT5 923 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 ZNF655Q8N720 491 aaPredicted RBP5.28□□□□□ -1.56
NUP88-209ENST00000574855 PDZD8Q8NEN9 1154 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms