RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ARMC5Q96C12 935 aa13.04□□□□□ -0.32
CHD3-216ENST00000573936 CNNM2Q9H8M5 875 aa13.04□□□□□ -0.32
CHD3-216ENST00000573936 SYNPO2Q9UMS6 1093 aa13.04□□□□□ -0.32
CHD3-216ENST00000573936 PLIN4Q96Q06 1357 aa13.04□□□□□ -0.32
CHD3-216ENST00000573936 PHIPQ8WWQ0 1821 aa13.04□□□□□ -0.32
CHD3-216ENST00000573936 CEP290O15078 2479 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 IGKV6D-41A0A0C4DH26 115 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 TLR2O60603 784 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 TTLL1O95922 423 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 HOXA7P31268 230 aaPredicted RBP13.03□□□□□ -0.32
CHD3-216ENST00000573936 ATP2B2Q01814 1243 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 KIF22Q14807 665 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 ZYXQ15942 572 aaKnown RBP13.03□□□□□ -0.32
CHD3-216ENST00000573936 CCDC178Q5BJE1 867 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 FAM47AQ5JRC9 791 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 RRP12Q5JTH9 1297 aaKnown RBP13.03□□□□□ -0.32
CHD3-216ENST00000573936 LPAR1Q92633 364 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 ESR2Q92731 530 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHD3-216ENST00000573936 KRT23Q9C075 422 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 GOPCQ9HD26 462 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 ANO2Q9NQ90 1003 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 INCENPQ9NQS7 918 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 EMILIN3Q9NT22 766 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 TCP11L1Q9NUJ3 509 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 MTMR4Q9NYA4 1195 aa13.03□□□□□ -0.32
CHD3-216ENST00000573936 A0A1W2PRG0 241 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L15C9J2P7 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L13C9JLJ4 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L11C9JVI0 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L18D6R9N7 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L22D6RA61 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L17D6RBQ6 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L19D6RCP7 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L20D6RJB6 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 IRX3P78415 501 aaPredicted RBP13.02□□□□□ -0.33
CHD3-216ENST00000573936 USP17L24Q0WX57 530 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 TRDNQ13061 729 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 TREML2Q5T2D2 321 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 SIAH1Q8IUQ4 282 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 TBC1D10CQ8IV04 446 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 GTF3C2Q8WUA4 911 aaPredicted RBP13.02□□□□□ -0.33
CHD3-216ENST00000573936 MKL1Q969V6 931 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 CEP95Q96GE4 821 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 LSG1Q9H089 658 aaKnown RBP13.02□□□□□ -0.33
CHD3-216ENST00000573936 VCPKMTQ9H867 229 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 CLIP2Q9UDT6 1046 aa13.02□□□□□ -0.33
CHD3-216ENST00000573936 RBM8AQ9Y5S9 174 aaKnown RBP13.02□□□□□ -0.33
CHD3-216ENST00000573936 EIF5BO60841 1220 aaKnown RBP13.01□□□□□ -0.33
CHD3-216ENST00000573936 MYCP01106 439 aaPredicted RBP13.01□□□□□ -0.33
CHD3-216ENST00000573936 FXR1P51114 621 aaKnown RBP eCLIP13.01□□□□□ -0.33
CHD3-216ENST00000573936 SMCR8Q8TEV9 937 aaPredicted RBP13.01□□□□□ -0.33
CHD3-216ENST00000573936 NBPF3Q9H094 633 aa13.01□□□□□ -0.33
CHD3-216ENST00000573936 COLQQ9Y215 455 aaPredicted RBP13.01□□□□□ -0.33
CHD3-216ENST00000573936 TACC3Q9Y6A5 838 aa13.01□□□□□ -0.33
CHD3-216ENST00000573936 PTCH2Q9Y6C5 1203 aa13.01□□□□□ -0.33
CHD3-216ENST00000573936 MYH8P13535 1937 aa13.01□□□□□ -0.33
CHD3-216ENST00000573936 WDR46O15213 610 aaKnown RBP13□□□□□ -0.33
CHD3-216ENST00000573936 REC8O95072 547 aa13□□□□□ -0.33
CHD3-216ENST00000573936 CYP21A2P08686 494 aa13□□□□□ -0.33
CHD3-216ENST00000573936 VCAM1P19320 739 aa13□□□□□ -0.33
CHD3-216ENST00000573936 GCLCP48506 637 aaPredicted RBP13□□□□□ -0.33
CHD3-216ENST00000573936 RNF20Q5VTR2 975 aa13□□□□□ -0.33
CHD3-216ENST00000573936 C17orf99Q6UX52 265 aa13□□□□□ -0.33
CHD3-216ENST00000573936 CATSPERGQ6ZRH7 1159 aa13□□□□□ -0.33
CHD3-216ENST00000573936 IQCA1Q86XH1 822 aa13□□□□□ -0.33
CHD3-216ENST00000573936 CLEC10AQ8IUN9 316 aa13□□□□□ -0.33
CHD3-216ENST00000573936 ZNF333Q96JL9 665 aa13□□□□□ -0.33
CHD3-216ENST00000573936 TTC14Q96N46 770 aa13□□□□□ -0.33
CHD3-216ENST00000573936 ARHGAP39Q9C0H5 1083 aa13□□□□□ -0.33
CHD3-216ENST00000573936 ASCC2Q9H1I8 757 aaPredicted RBP13□□□□□ -0.33
CHD3-216ENST00000573936 RPAP3Q9H6T3 665 aaPredicted RBP13□□□□□ -0.33
CHD3-216ENST00000573936 NEDD4P46934 1319 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 F5H6K3 240 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 EPB41L2O43491 1005 aaKnown RBP12.99□□□□□ -0.33
CHD3-216ENST00000573936 RAD21O60216 631 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 ECM2O94769 699 aaPredicted RBP12.99□□□□□ -0.33
CHD3-216ENST00000573936 CYP2C8P10632 490 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 NOVP48745 357 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 KLRC3Q07444 240 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 NECTIN1Q15223 517 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 GMCL1P1Q8NEA9 526 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 IL17RBQ9NRM6 502 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 HOXC10Q9NYD6 342 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 STX8Q9UNK0 236 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 RANBP2P49792 3224 aaKnown RBP12.99□□□□□ -0.33
CHD3-216ENST00000573936 LOC285556D6RIA3 1793 aa12.99□□□□□ -0.33
CHD3-216ENST00000573936 ADGRA2Q96PE1 1338 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 B4E1Z4 1266 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 E7EWF7 191 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 KDM4AO75164 1064 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 COG2Q14746 738 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 CREB3L3Q68CJ9 461 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 RALYLQ86SE5 291 aaKnown RBP12.98□□□□□ -0.33
CHD3-216ENST00000573936 DGKHQ86XP1 1220 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 NCOA7Q8NI08 942 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 DPF3Q92784 378 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 P2RX7Q99572 595 aaKnown RBP12.98□□□□□ -0.33
CHD3-216ENST00000573936 ZSWIM5Q9P217 1185 aa12.98□□□□□ -0.33
CHD3-216ENST00000573936 CPA4Q9UI42 421 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms