RNA–Protein interactions for RNA: ENST00000569653.1

GTF3C1-211, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 2

Gene GTF3C1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-211ENST00000569653 CTR9Q6PD62 1173 aa16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 GTF3C2Q8WUA4 911 aaPredicted RBP16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 CHMP4BQ9H444 224 aaKnown RBP16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 HMX1Q9NP08 348 aaPredicted RBP16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 ECHDC1Q9NTX5 307 aa16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 OGDHLQ9ULD0 1010 aa16.7■□□□□ 0.26
GTF3C1-211ENST00000569653 ZKSCAN1P17029 563 aaPredicted RBP16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 MAP2K5Q13163 448 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 TMEM179Q6ZVK1 233 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 C16orf86Q6ZW13 317 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 OSBP2Q969R2 916 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 STRBPQ96SI9 672 aaKnown RBP16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 APBA2Q99767 749 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 HTATIP2Q9BUP3 242 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.69■□□□□ 0.263e-6■■□□□ 11.8
GTF3C1-211ENST00000569653 SLC4A4Q9Y6R1 1079 aa16.69■□□□□ 0.26
GTF3C1-211ENST00000569653 PTPREP23469 700 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 RGS2P41220 211 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 LHX8Q68G74 356 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 SPICE1Q8N0Z3 855 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 NPLOC4Q8TAT6 608 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 EPB41L4AQ9HCS5 686 aaPredicted RBP16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 SWAP70Q9UH65 585 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 MYH4Q9Y623 1939 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 PFASO15067 1338 aa16.68■□□□□ 0.26
GTF3C1-211ENST00000569653 GSG1L2A8MUP6 293 aa16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 GRB14Q14449 540 aa16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 KBTBD3Q8NAB2 608 aa16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 TRPV1Q8NER1 839 aa16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 MOV10L1Q9BXT6 1211 aaKnown RBP16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 TMX2Q9Y320 296 aa16.67■□□□□ 0.26
GTF3C1-211ENST00000569653 SLC15A5A6NIM6 579 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 M0R2C6 588 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 ICA1Q05084 483 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 WDR78Q5VTH9 848 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 NECAB2Q7Z6G3 386 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 ANKLE1Q8NAG6 615 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 ATG4CQ96DT6 458 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 YTHDC1Q96MU7 727 aaKnown RBP16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 TANGO6Q9C0B7 1094 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 VCPKMTQ9H867 229 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 PLXNA1Q9UIW2 1896 aa16.66■□□□□ 0.26
GTF3C1-211ENST00000569653 HOXC6P09630 235 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 EEF2P13639 858 aaKnown RBP16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 DSG3P32926 999 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 COG2Q14746 738 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 PI4K2BQ8TCG2 481 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 FBXO28Q9NVF7 368 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 SMCHD1A6NHR9 2005 aa16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 LAMA2P24043 3122 aaKnown RBP16.65■□□□□ 0.26
GTF3C1-211ENST00000569653 ROBO3Q96MS0 1386 aa16.64■□□□□ 0.26
GTF3C1-211ENST00000569653 EVI5O60447 810 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 COL6A1P12109 1028 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 RASA1P20936 1047 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 CCNA1P78396 465 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 CCAR1Q8IX12 1150 aaKnown RBP16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 STK11IPQ8N1F8 1099 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 APPBP2Q92624 585 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 SEC62Q99442 399 aaKnown RBP16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 SPATC1LQ9H0A9 340 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 SALL3Q9BXA9 1300 aa16.64■□□□□ 0.25
GTF3C1-211ENST00000569653 RNF113AO15541 343 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 COBLO75128 1261 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 CAPN2P17655 700 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 ERCC3P19447 782 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 CYP2C19P33261 490 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 RRP1P56182 461 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 SBK1Q52WX2 424 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 ZSCAN25Q6NSZ9 544 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 TRMT44Q8IYL2 757 aaKnown RBP16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 C7orf61Q8IZ16 206 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 LPAR1Q92633 364 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 CCDC17Q96LX7 622 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 NBPF3Q9H094 633 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 C11orf49Q9H6J7 331 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 ADAMTS5Q9UNA0 930 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 NR2E3Q9Y5X4 410 aa16.63■□□□□ 0.25
GTF3C1-211ENST00000569653 FOXP2O15409 715 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 GPAA1O43292 621 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 FLOT1O75955 427 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 ADORA2AP29274 412 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 TMEM132BQ14DG7 1078 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 REPS2Q8NFH8 660 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 ARHGEF10LQ9HCE6 1279 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 ARPP21Q9UBL0 812 aaPredicted RBP16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 STAP2Q9UGK3 403 aa16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 ZMYND8Q9ULU4 1186 aaPredicted RBP16.62■□□□□ 0.25
GTF3C1-211ENST00000569653 IGKV6D-41A0A0C4DH26 115 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 SOX1O00570 391 aaPredicted RBP16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 WDR46O15213 610 aaKnown RBP16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 CYBAP13498 195 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 ATP2B2Q01814 1243 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 SHCBP1Q8NEM2 672 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 CRBNQ96SW2 442 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 NUP88Q99567 741 aaPredicted RBP16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 CWC22Q9HCG8 908 aaKnown RBP16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 HOXC10Q9NYD6 342 aa16.61■□□□□ 0.25
GTF3C1-211ENST00000569653 MINDY4BA8MYZ0 360 aa16.6■□□□□ 0.25
GTF3C1-211ENST00000569653 GLRX3O76003 335 aaKnown RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms