RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 PORCNQ9H237 461 aa21.98■■□□□ 1.11
CLN3-237ENST00000569030 ARHGEF10LQ9HCE6 1279 aa21.98■■□□□ 1.11
CLN3-237ENST00000569030 FOXP2O15409 715 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 CCL5P13501 91 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 EEF2P13639 858 aaKnown RBP21.97■■□□□ 1.11
CLN3-237ENST00000569030 PLEKHM2Q8IWE5 1019 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 PXYLP1Q8TE99 480 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 GTF3C2Q8WUA4 911 aaPredicted RBP21.97■■□□□ 1.11
CLN3-237ENST00000569030 KANSL2Q9H9L4 492 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 MKNK2Q9HBH9 465 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 RABGAP1Q9Y3P9 1069 aa21.97■■□□□ 1.11
CLN3-237ENST00000569030 SPDYE16A6NNV3 312 aaPredicted RBP21.96■■□□□ 1.11
CLN3-237ENST00000569030 ATP2B2Q01814 1243 aa21.96■■□□□ 1.11
CLN3-237ENST00000569030 LBX2Q6XYB7 198 aa21.96■■□□□ 1.11
CLN3-237ENST00000569030 SPICE1Q8N0Z3 855 aa21.96■■□□□ 1.11
CLN3-237ENST00000569030 BTBD7Q9P203 1132 aa21.96■■□□□ 1.11
CLN3-237ENST00000569030 COL11A1P12107 1806 aaPredicted RBP21.95■■□□□ 1.1
CLN3-237ENST00000569030 UBXN2AP68543 259 aa21.95■■□□□ 1.1
CLN3-237ENST00000569030 NACAP1Q9BZK3 213 aa21.95■■□□□ 1.1
CLN3-237ENST00000569030 TANGO6Q9C0B7 1094 aa21.95■■□□□ 1.1
CLN3-237ENST00000569030 VCPKMTQ9H867 229 aa21.95■■□□□ 1.1
CLN3-237ENST00000569030 PRDM1O75626 825 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 INHAP05111 366 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 MAPK4P31152 587 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 COG2Q14746 738 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 VPS53Q5VIR6 699 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 LPAR1Q92633 364 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 FAM227BQ96M60 508 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 RNF208Q9H0X6 261 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 NAPBQ9H115 298 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 UNC93B1Q9H1C4 597 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 SH2D4AQ9H788 454 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 A0A0G2JMZ2 1700 aa21.94■■□□□ 1.1
CLN3-237ENST00000569030 TRIM6-TRIM34B2RNG4 842 aa21.93■■□□□ 1.1
CLN3-237ENST00000569030 GPR142Q7Z601 462 aa21.93■■□□□ 1.1
CLN3-237ENST00000569030 OSBPL3Q9H4L5 887 aa21.93■■□□□ 1.1
CLN3-237ENST00000569030 HELLSQ9NRZ9 838 aa21.93■■□□□ 1.1
CLN3-237ENST00000569030 HOXC10Q9NYD6 342 aa21.93■■□□□ 1.1
CLN3-237ENST00000569030 A0A0D9SFI3 127 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 GJB1P08034 283 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 PPARAQ07869 468 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 PLEKHH3Q7Z736 793 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 CCAR1Q8IX12 1150 aaKnown RBP21.92■■□□□ 1.1
CLN3-237ENST00000569030 ZNF444Q8N0Y2 327 aaPredicted RBP21.92■■□□□ 1.1
CLN3-237ENST00000569030 USP6NLQ92738 828 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 RILPL2Q969X0 211 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 SHISA4Q96DD7 197 aa21.92■■□□□ 1.1
CLN3-237ENST00000569030 ZNFX1Q9P2E3 1918 aaKnown RBP21.92■■□□□ 1.1
CLN3-237ENST00000569030 CEP290O15078 2479 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 IGKV6D-41A0A0C4DH26 115 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 CYP2B6P20813 491 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 DSG3P32926 999 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 TRIM32Q13049 653 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 MORN1Q5T089 497 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 NUDT12Q9BQG2 462 aa21.91■■□□□ 1.1
CLN3-237ENST00000569030 WDR46O15213 610 aaKnown RBP21.9■■□□□ 1.1
CLN3-237ENST00000569030 FLOT1O75955 427 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 GJA8P48165 433 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 CCNA1P78396 465 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 NMIQ13287 307 aaPredicted RBP21.9■■□□□ 1.1
CLN3-237ENST00000569030 MCMDC2Q4G0Z9 681 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 TICAM2Q86XR7 235 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 TRIB2Q92519 343 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 ZNF287Q9HBT7 754 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 INCENPQ9NQS7 918 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 NYAP2Q9P242 653 aa21.9■■□□□ 1.1
CLN3-237ENST00000569030 RAD21O60216 631 aa21.89■■□□□ 1.09
CLN3-237ENST00000569030 ZNF589Q86UQ0 364 aaPredicted RBP21.89■■□□□ 1.09
CLN3-237ENST00000569030 SOCS4Q8WXH5 440 aa21.89■■□□□ 1.09
CLN3-237ENST00000569030 ATG4CQ96DT6 458 aa21.89■■□□□ 1.09
CLN3-237ENST00000569030 GOPCQ9HD26 462 aa21.89■■□□□ 1.09
CLN3-237ENST00000569030 TACC3Q9Y6A5 838 aa21.89■■□□□ 1.09
CLN3-237ENST00000569030 HMGCRP04035 888 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 XRCC5P13010 732 aaKnown RBP21.88■■□□□ 1.09
CLN3-237ENST00000569030 SDSP20132 328 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 CTDSPL2Q05D32 466 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 PDE4BQ07343 736 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 FAM47AQ5JRC9 791 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 SAMD1Q6SPF0 538 aaPredicted RBP21.88■■□□□ 1.09
CLN3-237ENST00000569030 U2AF1L4Q8WU68 220 aaKnown RBP21.88■■□□□ 1.09
CLN3-237ENST00000569030 CEP95Q96GE4 821 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 MOV10L1Q9BXT6 1211 aaKnown RBP21.88■■□□□ 1.09
CLN3-237ENST00000569030 FBXO28Q9NVF7 368 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 CLIP2Q9UDT6 1046 aa21.88■■□□□ 1.09
CLN3-237ENST00000569030 SLC3A2P08195 630 aaKnown RBP21.87■■□□□ 1.09
CLN3-237ENST00000569030 PTPREP23469 700 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 PDE4AP27815 886 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 ALX1Q15699 326 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 CCL14Q16627 93 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 FAM83BQ5T0W9 1011 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 WDR78Q5VTH9 848 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 NKX2-3Q8TAU0 364 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 NUP88Q99567 741 aaPredicted RBP21.87■■□□□ 1.09
CLN3-237ENST00000569030 CWC22Q9HCG8 908 aaKnown RBP21.87■■□□□ 1.09
CLN3-237ENST00000569030 PAK6Q9NQU5 681 aaPredicted RBP21.87■■□□□ 1.09
CLN3-237ENST00000569030 MTMR4Q9NYA4 1195 aa21.87■■□□□ 1.09
CLN3-237ENST00000569030 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLN3-237ENST00000569030 F5H6K3 240 aa21.86■■□□□ 1.09
CLN3-237ENST00000569030 SGPL1O95470 568 aa21.86■■□□□ 1.09
CLN3-237ENST00000569030 FGAP02671 866 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms