RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 CERKLQ49MI3 558 aaPredicted RBP19.83■□□□□ 0.77
CLK3-223ENST00000568488 CCDC129Q6ZRS4 1044 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 CABP5Q9NP86 173 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 XPNPEP3Q9NQH7 507 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 NOB1Q9ULX3 412 aaKnown RBP19.83■□□□□ 0.77
CLK3-223ENST00000568488 PHF24Q9UPV7 400 aa19.83■□□□□ 0.77
CLK3-223ENST00000568488 RARBP10826 455 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 USP5P45974 858 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 PLS1Q14651 629 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 COG2Q14746 738 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 TTC39AQ5SRH9 613 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 TATDN1Q6P1N9 297 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 SPATC1LQ9H0A9 340 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 PRDM12Q9H4Q4 367 aa19.82■□□□□ 0.76
CLK3-223ENST00000568488 MRPS5P82675 430 aaKnown RBP19.81■□□□□ 0.76
CLK3-223ENST00000568488 G3BP1Q13283 466 aaKnown RBP eCLIP19.81■□□□□ 0.76
CLK3-223ENST00000568488 RNF180Q86T96 592 aa19.81■□□□□ 0.76
CLK3-223ENST00000568488 NCAPG2Q86XI2 1143 aa19.81■□□□□ 0.76
CLK3-223ENST00000568488 HOXC10Q9NYD6 342 aa19.81■□□□□ 0.76
CLK3-223ENST00000568488 ZNF521Q96K83 1311 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 E9PSI1 815 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 PGK1P00558 417 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 SLC44A5Q8NCS7 719 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 TANGO6Q9C0B7 1094 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 SERPINB13Q9UIV8 391 aa19.8■□□□□ 0.76
CLK3-223ENST00000568488 A0A1W2PQ45 241 aaPredicted RBP19.79■□□□□ 0.76
CLK3-223ENST00000568488 A0A1W2PQY0 241 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 GRXCR1A8MXD5 290 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 ANP32CO43423 234 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 CYP2E1P05181 493 aaPredicted RBP19.79■□□□□ 0.76
CLK3-223ENST00000568488 CYP7A1P22680 504 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 IGFBP4P22692 258 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 PBX2P40425 430 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 CCDC158Q5M9N0 1113 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 AKNAD1Q5T1N1 836 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 SHCBP1Q8NEM2 672 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 MAML3Q96JK9 1138 aa19.79■□□□□ 0.76
CLK3-223ENST00000568488 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.79■□□□□ 0.762e-8■■■□□ 17
CLK3-223ENST00000568488 API5Q9BZZ5 524 aaKnown RBP19.79■□□□□ 0.76
CLK3-223ENST00000568488 DCDC2CA8MYV0 355 aa19.78■□□□□ 0.76
CLK3-223ENST00000568488 FAAP100Q0VG06 881 aa19.78■□□□□ 0.76
CLK3-223ENST00000568488 SAMD1Q6SPF0 538 aaPredicted RBP19.78■□□□□ 0.76
CLK3-223ENST00000568488 MIGA1Q8NAN2 632 aa19.78■□□□□ 0.76
CLK3-223ENST00000568488 PBX4Q9BYU1 374 aa19.78■□□□□ 0.76
CLK3-223ENST00000568488 MROH8Q9H579 483 aa19.78■□□□□ 0.76
CLK3-223ENST00000568488 GNAI3P08754 354 aa19.77■□□□□ 0.76
CLK3-223ENST00000568488 SEPT2Q15019 361 aa19.77■□□□□ 0.76
CLK3-223ENST00000568488 TTC6Q86TZ1 520 aa19.77■□□□□ 0.76
CLK3-223ENST00000568488 CDK5RAP2Q96SN8 1893 aa19.77■□□□□ 0.76
CLK3-223ENST00000568488 MPHOSPH10O00566 681 aaKnown RBP19.76■□□□□ 0.75
CLK3-223ENST00000568488 TIMP1P01033 207 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 FCER1AP12319 257 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 MTX1Q13505 466 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 ABRAQ8N0Z2 381 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 EHD4Q9H223 541 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 STARD7Q9NQZ5 370 aa19.76■□□□□ 0.75
CLK3-223ENST00000568488 FOCADQ5VW36 1801 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 GUCY1A2P33402 732 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 SHMT1P34896 483 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 ZAP70P43403 619 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 ADGRE1Q14246 886 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 TOX2Q96NM4 488 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 PIH1D3Q9NQM4 214 aaKnown RBP19.75■□□□□ 0.75
CLK3-223ENST00000568488 SMCHD1A6NHR9 2005 aa19.75■□□□□ 0.75
CLK3-223ENST00000568488 A0A1W2PRG0 241 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 TAL1P17542 331 aaPredicted RBP19.74■□□□□ 0.75
CLK3-223ENST00000568488 HOXD11P31277 338 aaPredicted RBP19.74■□□□□ 0.75
CLK3-223ENST00000568488 SLFN5Q08AF3 891 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 TMEM240Q5SV17 173 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 MFSD5Q6N075 450 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 CCDC174Q6PII3 467 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 ANKRD33Q7Z3H0 272 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 MB21D1Q8N884 522 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 LENG1Q96BZ8 264 aaPredicted RBP19.74■□□□□ 0.75
CLK3-223ENST00000568488 NECAB3Q96P71 396 aaPredicted RBP19.74■□□□□ 0.75
CLK3-223ENST00000568488 DBNDD2Q9BQY9 259 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 C1QTNF1Q9BXJ1 281 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 NRBP1Q9UHY1 535 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 ZNF236Q9UL36 1845 aa19.74■□□□□ 0.75
CLK3-223ENST00000568488 MYH1P12882 1939 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 IDH1O75874 414 aaKnown RBP19.73■□□□□ 0.75
CLK3-223ENST00000568488 FLOT1O75955 427 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 POLR3DP05423 398 aaPredicted RBP19.73■□□□□ 0.75
CLK3-223ENST00000568488 PGK2P07205 417 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 DSG3P32926 999 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 PLCD1P51178 756 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 ACLYP53396 1101 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 PPIGQ13427 754 aaKnown RBP eCLIP19.73■□□□□ 0.753e-10■■■□□ 17.1
CLK3-223ENST00000568488 C16orf59Q7L2K0 433 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 NUP133Q8WUM0 1156 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 ATG4CQ96DT6 458 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 CDCA7LQ96GN5 454 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 MMP19Q99542 508 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 TINF2Q9BSI4 451 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 TSPYL2Q9H2G4 693 aaPredicted RBP19.73■□□□□ 0.75
CLK3-223ENST00000568488 MSRAQ9UJ68 235 aa19.73■□□□□ 0.75
CLK3-223ENST00000568488 APBB1O00213 710 aa19.72■□□□□ 0.75
CLK3-223ENST00000568488 ACRP10323 421 aa19.72■□□□□ 0.75
CLK3-223ENST00000568488 MAGEB6Q8N7X4 407 aa19.72■□□□□ 0.75
CLK3-223ENST00000568488 MYO9BQ13459 2157 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms