RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 TMX2Q9Y320 296 aa17.94■□□□□ 0.46
VPS39-210ENST00000568357 RANBP2P49792 3224 aaKnown RBP17.93■□□□□ 0.46
VPS39-210ENST00000568357 EEF2P13639 858 aaKnown RBP17.93■□□□□ 0.46
VPS39-210ENST00000568357 PRMT2P55345 433 aa17.93■□□□□ 0.46
VPS39-210ENST00000568357 PRKCZQ05513 592 aa17.93■□□□□ 0.46
VPS39-210ENST00000568357 PPARAQ07869 468 aa17.93■□□□□ 0.46
VPS39-210ENST00000568357 Q3C1V9 767 aa17.93■□□□□ 0.46
VPS39-210ENST00000568357 ZNF589Q86UQ0 364 aaPredicted RBP17.93■□□□□ 0.46
VPS39-210ENST00000568357 RPAP3Q9H6T3 665 aaPredicted RBP17.93■□□□□ 0.46
VPS39-210ENST00000568357 MYPNQ86TC9 1320 aa17.93■□□□□ 0.46
VPS39-210ENST00000568357 TNPO2O14787 897 aaKnown RBP17.92■□□□□ 0.46
VPS39-210ENST00000568357 SH3TC2Q8TF17 1288 aa17.92■□□□□ 0.46
VPS39-210ENST00000568357 ARHGEF10LQ9HCE6 1279 aa17.92■□□□□ 0.46
VPS39-210ENST00000568357 INCENPQ9NQS7 918 aa17.92■□□□□ 0.46
VPS39-210ENST00000568357 FLT3LGP49771 235 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 ATP2B2Q01814 1243 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 ALX1Q15699 326 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 ZNF444Q8N0Y2 327 aaPredicted RBP17.91■□□□□ 0.46
VPS39-210ENST00000568357 SPICE1Q8N0Z3 855 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 GPRC5AQ8NFJ5 357 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 COL6A3P12111 3177 aa17.91■□□□□ 0.46
VPS39-210ENST00000568357 CNMDO75829 334 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 FGAP02671 866 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 HSPD1P10809 573 aaKnown RBP17.9■□□□□ 0.46
VPS39-210ENST00000568357 CTDSPL2Q05D32 466 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 NBPF11Q86T75 865 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 RAET1EQ8TD07 263 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 SHISA4Q96DD7 197 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 PAGR1Q9BTK6 254 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 VCPKMTQ9H867 229 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 ZNF287Q9HBT7 754 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 TACC3Q9Y6A5 838 aa17.9■□□□□ 0.46
VPS39-210ENST00000568357 IGKV6D-41A0A0C4DH26 115 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 SLC3A2P08195 630 aaKnown RBP17.89■□□□□ 0.45
VPS39-210ENST00000568357 GSPT1P15170 499 aaKnown RBP17.89■□□□□ 0.45
VPS39-210ENST00000568357 ERVK-9P63128 1117 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 ERVK-24P63145 666 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 PDE4BQ07343 736 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 FAM47AQ5JRC9 791 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 TTC22Q5TAA0 569 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 CWC27Q6UX04 472 aaKnown RBP17.89■□□□□ 0.45
VPS39-210ENST00000568357 LPAR1Q92633 364 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 COA7Q96BR5 231 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 PRO3102Q9H379 93 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 SH2D4AQ9H788 454 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 GJD2Q9UKL4 321 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 CCDC171Q6TFL3 1326 aa17.89■□□□□ 0.45
VPS39-210ENST00000568357 SPDYE16A6NNV3 312 aaPredicted RBP17.88■□□□□ 0.45
VPS39-210ENST00000568357 GRK4P32298 578 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 COG2Q14746 738 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 LBX2Q6XYB7 198 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 GTF3C2Q8WUA4 911 aaPredicted RBP17.88■□□□□ 0.45
VPS39-210ENST00000568357 TANGO6Q9C0B7 1094 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 PORCNQ9H237 461 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 BTBD7Q9P203 1132 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 NYAP2Q9P242 653 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 ANAPC4Q9UJX5 808 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS39-210ENST00000568357 RABGAP1Q9Y3P9 1069 aa17.88■□□□□ 0.45
VPS39-210ENST00000568357 TFAP4Q01664 338 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 NEDD1Q8NHV4 660 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 DPF3Q92784 378 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 CEP95Q96GE4 821 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 DIAPH3Q9NSV4 1193 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 MTMR4Q9NYA4 1195 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 HOXC10Q9NYD6 342 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 CLIP2Q9UDT6 1046 aa17.87■□□□□ 0.45
VPS39-210ENST00000568357 ADCY3O60266 1144 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 FGRP09769 529 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 TSPY3P0CV98 308 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 TSPY8P0CW00 308 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 IRF5Q13568 498 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 MKL1Q969V6 931 aa17.86■□□□□ 0.45
VPS39-210ENST00000568357 HIP1O00291 1037 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 SOX1O00570 391 aaPredicted RBP17.85■□□□□ 0.45
VPS39-210ENST00000568357 WDR46O15213 610 aaKnown RBP17.85■□□□□ 0.45
VPS39-210ENST00000568357 RAD21O60216 631 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 FLOT1O75955 427 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 ELNP15502 786 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 DSG3P32926 999 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 MTFR1Q15390 333 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 IL25Q9H293 177 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 GOPCQ9HD26 462 aa17.85■□□□□ 0.45
VPS39-210ENST00000568357 F5H6K3 240 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 MAPK4P31152 587 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 MFAP1P55081 439 aaKnown RBP17.84■□□□□ 0.45
VPS39-210ENST00000568357 KLRC3Q07444 240 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 SLAIN1Q8ND83 568 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 PXYLP1Q8TE99 480 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 NUP88Q99567 741 aaPredicted RBP17.84■□□□□ 0.45
VPS39-210ENST00000568357 NBPF3Q9H094 633 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 IL17RBQ9NRM6 502 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 FBXO28Q9NVF7 368 aa17.84■□□□□ 0.45
VPS39-210ENST00000568357 PLIN4Q96Q06 1357 aa17.83■□□□□ 0.45
VPS39-210ENST00000568357 ZMYM6O95789 1325 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 ORC4O43929 436 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 NMT2O60551 498 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 TTLL1O95922 423 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 NDUFB10O96000 172 aa17.83■□□□□ 0.44
VPS39-210ENST00000568357 HAND2P61296 217 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms