RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IKBKBO14920 756 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 TPM2P07951 284 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 BMP6P22004 513 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 GRM4Q14833 912 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 ARID5BQ14865 1188 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 SLC35G1Q2M3R5 365 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 TBC1D22AQ8WUA7 517 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 FAM205AQ6ZU69 1335 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 SNED1Q8TER0 1413 aa23.22■■□□□ 1.31
CLN3-230ENST00000568076 PRR29P0C7W0 189 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 NLRP5P59047 1200 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 COL23A1Q86Y22 540 aaPredicted RBP23.21■■□□□ 1.31
CLN3-230ENST00000568076 ATP6V0A2Q9Y487 856 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 SMTNL1A8MU46 457 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 ACTN4O43707 911 aaKnown RBP23.21■■□□□ 1.31
CLN3-230ENST00000568076 POSTNQ15063 836 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 ZNF174Q15697 407 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 CCDC178Q5BJE1 867 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 OLFM4Q6UX06 510 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 C16orf86Q6ZW13 317 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 TMC4Q7Z404 712 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 PDILTQ8N807 584 aa23.21■■□□□ 1.31
CLN3-230ENST00000568076 RIMBP2O15034 1052 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 PLCG2P16885 1265 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 CDK8P49336 464 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 GTF2IP78347 998 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 DNTTIP2Q5QJE6 756 aaKnown RBP23.2■■□□□ 1.3
CLN3-230ENST00000568076 TTC38Q5R3I4 469 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 LRRC8AQ8IWT6 810 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 AKT1S1Q96B36 256 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 TMEM47Q9BQJ4 181 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 A0A087X0B3 334 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 SRGNP10124 158 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 GRAMD1CQ8IYS0 662 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 EPSTI1Q96J88 318 aa23.2■■□□□ 1.3
CLN3-230ENST00000568076 NRXN2Q9P2S2 1712 aa23.19■■□□□ 1.3
CLN3-230ENST00000568076 NT5DC1Q5TFE4 455 aa23.19■■□□□ 1.3
CLN3-230ENST00000568076 PIK3AP1Q6ZUJ8 805 aa23.19■■□□□ 1.3
CLN3-230ENST00000568076 GPKOWQ92917 476 aaPredicted RBP eCLIP23.19■■□□□ 1.3
CLN3-230ENST00000568076 XPO4Q9C0E2 1151 aaKnown RBP23.19■■□□□ 1.3
CLN3-230ENST00000568076 IFNKQ9P0W0 207 aa23.19■■□□□ 1.3
CLN3-230ENST00000568076 STX8Q9UNK0 236 aa23.19■■□□□ 1.3
CLN3-230ENST00000568076 CYTH3O43739 400 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 BMP15O95972 392 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 LMOD1P29536 600 aaPredicted RBP23.18■■□□□ 1.3
CLN3-230ENST00000568076 SARSP49591 514 aaKnown RBP23.18■■□□□ 1.3
CLN3-230ENST00000568076 TYW1BQ6NUM6 668 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 FILIP1Q7Z7B0 1213 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 SLF2Q8IX21 1173 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 EYA3Q99504 573 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 MAN1B1Q9UKM7 699 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 DAGLAQ9Y4D2 1042 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 ATP1A3P13637 1013 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 RASGRP2Q7LDG7 609 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 NLGN1Q8N2Q7 840 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 FERMT2Q96AC1 680 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 COA1Q9GZY4 146 aa23.18■■□□□ 1.3
CLN3-230ENST00000568076 HOOK1Q9UJC3 728 aaKnown RBP23.18■■□□□ 1.3
CLN3-230ENST00000568076 SMC2O95347 1197 aa23.17■■□□□ 1.3
CLN3-230ENST00000568076 TPM4P67936 248 aa23.17■■□□□ 1.3
CLN3-230ENST00000568076 ATP2C1P98194 919 aaPredicted RBP23.17■■□□□ 1.3
CLN3-230ENST00000568076 MYL5Q02045 173 aa23.17■■□□□ 1.3
CLN3-230ENST00000568076 SYMPKQ92797 1274 aaKnown RBP23.17■■□□□ 1.3
CLN3-230ENST00000568076 ZNF287Q9HBT7 754 aa23.17■■□□□ 1.3
CLN3-230ENST00000568076 SH3GLB2Q9NR46 395 aa23.17■■□□□ 1.3
CLN3-230ENST00000568076 PALM3A6NDB9 673 aaPredicted RBP23.16■■□□□ 1.3
CLN3-230ENST00000568076 PTGDRQ13258 359 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 CERS5Q8N5B7 392 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 NEDD1Q8NHV4 660 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 MTMR7Q9Y216 660 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 PLSCR1O15162 318 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 GNAQP50148 359 aa23.16■■□□□ 1.3
CLN3-230ENST00000568076 UQCRHLA0A096LP55 91 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 UQCRHP07919 91 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 NPR1P16066 1061 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 TRAPPC10P48553 1259 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 FANCCQ00597 558 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 WWC2Q6AWC2 1192 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 BLIDQ8IZY5 108 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 SPATA20Q8TB22 786 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 DHX58Q96C10 678 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 MYH1P12882 1939 aa23.15■■□□□ 1.3
CLN3-230ENST00000568076 M0R2N6 131 aa23.14■■□□□ 1.3
CLN3-230ENST00000568076 CALML3P27482 149 aa23.14■■□□□ 1.3
CLN3-230ENST00000568076 MORC3Q14149 939 aa23.14■■□□□ 1.3
CLN3-230ENST00000568076 SMARCE1Q969G3 411 aa23.14■■□□□ 1.3
CLN3-230ENST00000568076 OSBPL5Q9H0X9 879 aaPredicted RBP23.14■■□□□ 1.3
CLN3-230ENST00000568076 VWA3AA6NCI4 1184 aa23.14■■□□□ 1.29
CLN3-230ENST00000568076 GOLGA8HP0CJ92 632 aa23.14■■□□□ 1.29
CLN3-230ENST00000568076 KANK3Q6NY19 840 aa23.14■■□□□ 1.29
CLN3-230ENST00000568076 PCDHA4Q9UN74 947 aa23.14■■□□□ 1.29
CLN3-230ENST00000568076 FOCADQ5VW36 1801 aa23.14■■□□□ 1.29
CLN3-230ENST00000568076 F8W031 263 aaPredicted RBP23.13■■□□□ 1.29
CLN3-230ENST00000568076 NEMFO60524 1076 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 APBA3O96018 575 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 HMGB2P26583 209 aaKnown RBP23.13■■□□□ 1.29
CLN3-230ENST00000568076 CCZ1BP86790 482 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 CCZ1P86791 482 aaPredicted RBP23.13■■□□□ 1.29
CLN3-230ENST00000568076 IL17AQ16552 155 aa23.13■■□□□ 1.29
CLN3-230ENST00000568076 SH3RF1Q7Z6J0 888 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms