RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 RAET1EQ8TD07 263 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 RPAP3Q9H6T3 665 aaPredicted RBP15.92■□□□□ 0.14
CLK3-218ENST00000566926 VCPKMTQ9H867 229 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 GOPCQ9HD26 462 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 TSHZ2Q9NRE2 1034 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 PTCH2Q9Y6C5 1203 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 ZMYM6O95789 1325 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 MYPNQ86TC9 1320 aa15.92■□□□□ 0.14
CLK3-218ENST00000566926 ECM2O94769 699 aaPredicted RBP15.91■□□□□ 0.14
CLK3-218ENST00000566926 HSPD1P10809 573 aaKnown RBP15.91■□□□□ 0.14
CLK3-218ENST00000566926 CTGFP29279 349 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 CWC27Q6UX04 472 aaKnown RBP15.91■□□□□ 0.14
CLK3-218ENST00000566926 CCAR1Q8IX12 1150 aaKnown RBP15.91■□□□□ 0.14
CLK3-218ENST00000566926 ARMC5Q96C12 935 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 HOXC10Q9NYD6 342 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 NYAP2Q9P242 653 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 ANAPC4Q9UJX5 808 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 RABGAP1Q9Y3P9 1069 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 PARP14Q460N5 1801 aa15.91■□□□□ 0.14
CLK3-218ENST00000566926 WDR46O15213 610 aaKnown RBP15.9■□□□□ 0.14
CLK3-218ENST00000566926 FGAP02671 866 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 TSPY3P0CV98 308 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 TSPY8P0CW00 308 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 CCNA1P78396 465 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 COG2Q14746 738 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 VPS53Q5VIR6 699 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 LBX2Q6XYB7 198 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 TANGO6Q9C0B7 1094 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 SYNPO2Q9UMS6 1093 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 RLFQ13129 1914 aa15.9■□□□□ 0.14
CLK3-218ENST00000566926 FOXP2O15409 715 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 PRDM1O75626 825 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 ERVK-9P63128 1117 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 ERVK-24P63145 666 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 ZNF589Q86UQ0 364 aaPredicted RBP15.89■□□□□ 0.13
CLK3-218ENST00000566926 NEDD1Q8NHV4 660 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 RUFY2Q8WXA3 655 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 PAGR1Q9BTK6 254 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 RBPJLQ9UBG7 517 aa15.89■□□□□ 0.13
CLK3-218ENST00000566926 RBBP6Q7Z6E9 1792 aaKnown RBP15.89■□□□□ 0.13
CLK3-218ENST00000566926 PLIN4Q96Q06 1357 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 TSPY2A6NKD2 308 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 TTLL1O95922 423 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 PCP11498 1178 aaKnown RBP15.88■□□□□ 0.13
CLK3-218ENST00000566926 MAPK4P31152 587 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 RGS19P49795 217 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 TFAP4Q01664 338 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 PRKCZQ05513 592 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 CTDSPL2Q05D32 466 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 IRF5Q13568 498 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 CLEC10AQ8IUN9 316 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 MB21D1Q8N884 522 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 SLAIN1Q8ND83 568 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLK3-218ENST00000566926 CWC22Q9HCG8 908 aaKnown RBP15.88■□□□□ 0.13
CLK3-218ENST00000566926 LAMA4Q16363 1823 aa15.88■□□□□ 0.13
CLK3-218ENST00000566926 COL11A1P12107 1806 aaPredicted RBP15.87■□□□□ 0.13
CLK3-218ENST00000566926 IGKV6D-41A0A0C4DH26 115 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 SPDYE16A6NNV3 312 aaPredicted RBP15.87■□□□□ 0.13
CLK3-218ENST00000566926 EPB41L2O43491 1005 aaKnown RBP15.87■□□□□ 0.13
CLK3-218ENST00000566926 ORC4O43929 436 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 RAD21O60216 631 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 REC8O95072 547 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 GRK4P32298 578 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 FLT3LGP49771 235 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 NT5C2P49902 561 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 SPICE1Q8N0Z3 855 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 PXYLP1Q8TE99 480 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 MKL1Q969V6 931 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 CEP95Q96GE4 821 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 ZNF333Q96JL9 665 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 DSCC1Q9BVC3 393 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 TMEM106CQ9BVX2 250 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 RNF41Q9H4P4 317 aaPredicted RBP15.87■□□□□ 0.13
CLK3-218ENST00000566926 TXNRD2Q9NNW7 524 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 MTMR4Q9NYA4 1195 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 CLIP2Q9UDT6 1046 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 CTNNA3Q9UI47 895 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLK3-218ENST00000566926 RAD50Q92878 1312 aa15.87■□□□□ 0.13
CLK3-218ENST00000566926 ZNFX1Q9P2E3 1918 aaKnown RBP15.86■□□□□ 0.13
CLK3-218ENST00000566926 FLOT1O75955 427 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 FGRP09769 529 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 DSG3P32926 999 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 SOX10P56693 466 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 UBXN2AP68543 259 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 SOCS4Q8WXH5 440 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 TOMM22Q9NS69 142 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 BIN2Q9UBW5 565 aaPredicted RBP15.86■□□□□ 0.13
CLK3-218ENST00000566926 GABRQQ9UN88 632 aa15.86■□□□□ 0.13
CLK3-218ENST00000566926 PLXNB2O15031 1838 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 F5H6K3 240 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 ZNF213O14771 459 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 ADCY3O60266 1144 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 RANBP6O60518 1105 aaKnown RBP15.85■□□□□ 0.13
CLK3-218ENST00000566926 KLRC3Q07444 240 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 Q3C1V9 767 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 FAM47AQ5JRC9 791 aa15.85■□□□□ 0.13
CLK3-218ENST00000566926 KIAA1755Q5JYT7 1200 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms