RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 ADGRA1Q86SQ6 560 aa20.62■□□□□ 0.89
CDH3-205ENST00000566808 SHCBP1Q8NEM2 672 aa20.62■□□□□ 0.89
CDH3-205ENST00000566808 MOV10L1Q9BXT6 1211 aaKnown RBP20.62■□□□□ 0.89
CDH3-205ENST00000566808 SMC4Q9NTJ3 1288 aa20.62■□□□□ 0.89
CDH3-205ENST00000566808 PARP14Q460N5 1801 aa20.62■□□□□ 0.89
CDH3-205ENST00000566808 MTX1Q13505 466 aa20.61■□□□□ 0.89
CDH3-205ENST00000566808 RAB3GAP1Q15042 981 aa20.61■□□□□ 0.89
CDH3-205ENST00000566808 UHRF1Q96T88 793 aaPredicted RBP20.61■□□□□ 0.89
CDH3-205ENST00000566808 MEIS3Q99687 375 aa20.61■□□□□ 0.89
CDH3-205ENST00000566808 EHD4Q9H223 541 aa20.61■□□□□ 0.89
CDH3-205ENST00000566808 REV3LO60673 3130 aa20.61■□□□□ 0.89
CDH3-205ENST00000566808 TRANK1O15050 2925 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 PQBP1O60828 265 aaKnown RBP20.6■□□□□ 0.89
CDH3-205ENST00000566808 IGSF3O75054 1194 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 MAP3K12Q12852 859 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 ACER1Q8TDN7 264 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 SPATC1LQ9H0A9 340 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 XPNPEP3Q9NQH7 507 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 SERPINB13Q9UIV8 391 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 NAV1Q8NEY1 1877 aa20.6■□□□□ 0.89
CDH3-205ENST00000566808 E9PSI1 815 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 COBLO75128 1261 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 RARBP10826 455 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 HOXD11P31277 338 aaPredicted RBP20.59■□□□□ 0.89
CDH3-205ENST00000566808 MRPS5P82675 430 aaKnown RBP20.59■□□□□ 0.89
CDH3-205ENST00000566808 RNF180Q86T96 592 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 ABRAQ8N0Z2 381 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 IL27Q8NEV9 243 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 TMEM39AQ9NV64 488 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 NRBP1Q9UHY1 535 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 XIRP2A4UGR9 3374 aa20.59■□□□□ 0.89
CDH3-205ENST00000566808 A0A1W2PQ45 241 aaPredicted RBP20.58■□□□□ 0.89
CDH3-205ENST00000566808 A0A1W2PQY0 241 aa20.58■□□□□ 0.89
CDH3-205ENST00000566808 ERCC3P19447 782 aa20.58■□□□□ 0.89
CDH3-205ENST00000566808 ABCB5Q2M3G0 1257 aa20.58■□□□□ 0.89
CDH3-205ENST00000566808 PPM1EQ8WY54 764 aa20.58■□□□□ 0.89
CDH3-205ENST00000566808 MAML3Q96JK9 1138 aa20.58■□□□□ 0.89
CDH3-205ENST00000566808 CERKLQ49MI3 558 aaPredicted RBP20.57■□□□□ 0.88
CDH3-205ENST00000566808 PRAMEF19Q5SWL8 479 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 ANKRD33Q7Z3H0 272 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 CERS3Q8IU89 383 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 MB21D1Q8N884 522 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 GBF1Q92538 1859 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 MROH8Q9H579 483 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 SNRKQ9NRH2 765 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 COL11A1P12107 1806 aaPredicted RBP20.57■□□□□ 0.88
CDH3-205ENST00000566808 MYH8P13535 1937 aa20.57■□□□□ 0.88
CDH3-205ENST00000566808 COG2Q14746 738 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 CCDC174Q6PII3 467 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 TOX2Q96NM4 488 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 API5Q9BZZ5 524 aaKnown RBP20.56■□□□□ 0.88
CDH3-205ENST00000566808 TANGO6Q9C0B7 1094 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 PRDM12Q9H4Q4 367 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 CABP5Q9NP86 173 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 HOXC10Q9NYD6 342 aa20.56■□□□□ 0.88
CDH3-205ENST00000566808 GNAI3P08754 354 aa20.55■□□□□ 0.88
CDH3-205ENST00000566808 TTC39AQ5SRH9 613 aa20.55■□□□□ 0.88
CDH3-205ENST00000566808 SLC44A5Q8NCS7 719 aa20.55■□□□□ 0.88
CDH3-205ENST00000566808 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.55■□□□□ 0.88
CDH3-205ENST00000566808 C1QTNF1Q9BXJ1 281 aa20.55■□□□□ 0.88
CDH3-205ENST00000566808 PBX4Q9BYU1 374 aa20.55■□□□□ 0.88
CDH3-205ENST00000566808 TCF20Q9UGU0 1960 aaKnown RBP20.54■□□□□ 0.88
CDH3-205ENST00000566808 DCDC2CA8MYV0 355 aa20.54■□□□□ 0.88
CDH3-205ENST00000566808 PGK1P00558 417 aa20.54■□□□□ 0.88
CDH3-205ENST00000566808 CYP2E1P05181 493 aaPredicted RBP20.54■□□□□ 0.88
CDH3-205ENST00000566808 USP5P45974 858 aa20.54■□□□□ 0.88
CDH3-205ENST00000566808 DYNLL1P63167 89 aaKnown RBP20.54■□□□□ 0.88
CDH3-205ENST00000566808 FAAP100Q0VG06 881 aa20.54■□□□□ 0.88
CDH3-205ENST00000566808 CCDC129Q6ZRS4 1044 aa20.54■□□□□ 0.88
CDH3-205ENST00000566808 TIMP1P01033 207 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 FCER1AP12319 257 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 RASIP1Q5U651 963 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 TTC6Q86TZ1 520 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 NCAPG2Q86XI2 1143 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 FAM9BQ8IZU0 186 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 TBX21Q9UL17 535 aa20.53■□□□□ 0.88
CDH3-205ENST00000566808 NOB1Q9ULX3 412 aaKnown RBP20.53■□□□□ 0.88
CDH3-205ENST00000566808 SHMT1P34896 483 aa20.52■□□□□ 0.88
CDH3-205ENST00000566808 PBX2P40425 430 aa20.52■□□□□ 0.88
CDH3-205ENST00000566808 PPIGQ13427 754 aaKnown RBP eCLIP20.52■□□□□ 0.88
CDH3-205ENST00000566808 CCDC158Q5M9N0 1113 aa20.52■□□□□ 0.88
CDH3-205ENST00000566808 TSEN34Q9BSV6 310 aaKnown RBP20.52■□□□□ 0.88
CDH3-205ENST00000566808 STARD7Q9NQZ5 370 aa20.52■□□□□ 0.88
CDH3-205ENST00000566808 ARIH1Q9Y4X5 557 aaPredicted RBP20.52■□□□□ 0.88
CDH3-205ENST00000566808 MROH7Q68CQ1 1323 aa20.52■□□□□ 0.87
CDH3-205ENST00000566808 SYNGAP1Q96PV0 1343 aa20.52■□□□□ 0.87
CDH3-205ENST00000566808 MUC6Q6W4X9 2439 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 AKR1A1P14550 325 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 CYP7A1P22680 504 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 GUCY1A2P33402 732 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 G3BP1Q13283 466 aaKnown RBP eCLIP20.51■□□□□ 0.87
CDH3-205ENST00000566808 ADGRE1Q14246 886 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 PLS1Q14651 629 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 MFSD5Q6N075 450 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 PSRC1Q6PGN9 363 aaPredicted RBP20.51■□□□□ 0.87
CDH3-205ENST00000566808 NUP133Q8WUM0 1156 aa20.51■□□□□ 0.87
CDH3-205ENST00000566808 ANP32CO43423 234 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 ADAMTS4O75173 837 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 ACLYP53396 1101 aa20.5■□□□□ 0.87
CDH3-205ENST00000566808 SEPT2Q15019 361 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms